Structure of PDB 4v7h Chain B1 Binding Site BS01

Receptor Information
>4v7h Chain B1 (length=48) Species: 5541 (Thermomyces lanuginosus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AQKSFRIKQKMAKAKKQNRPLPQWIRLRTNNTIRYNAKRRNWRRTKMN
Ligand information
>4v7h Chain B4 (length=157) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaauguagguugcagaauuccgugaaucaucgaucuu
ugaacgcacauugcgccccuugguauuccagggggcaugccuguuugagc
gucauuu
.........................................<<<<<<...
.....>>>.......<<<......................>>>.....>>
>...............<<<<<<<....>>>>>>>................
.......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4v7h Comprehensive molecular structure of the eukaryotic ribosome.
Resolution8.9 Å
Binding residue
(original residue number in PDB)
S6 F7 R8 K10 Q11 K12 K15 K18 R21 Q25 W26 L29
Binding residue
(residue number reindexed from 1)
S4 F5 R6 K8 Q9 K10 K13 K16 R19 Q23 W24 L27
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Mon Feb 17 08:19:13 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v7h', asym_id = 'B1', bs = 'BS01', title = 'Comprehensive molecular structure of the eukaryotic ribosome.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v7h', asym_id='B1', bs='BS01', title='Comprehensive molecular structure of the eukaryotic ribosome.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '4v7h', asym_id = 'B1'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='4v7h', asym_id='B1')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>