Structure of PDB 4v5o Chain B1 Binding Site BS01

Receptor Information
>4v5o Chain B1 (length=67) Species: 5911 (Tetrahymena thermophila) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NTEETTKARIMDVLGKTGSRGGITQVRVVLISGKEEGRQLIRNVKGACRV
GDVLELMECEREARRLR
Ligand information
>4v5o Chain BA (length=1745) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaccugguugauccugccaguuacauaugcuugucuuaaauauuaaccca
ugcaugugccaguucaguauugaacagcgaaacugcgaauggcucauuaa
aacaguuauaguuuauuugauaauuaaagauuacauggauaaccgagcua
auuguugggcuaauacaugcuuaaaauuccguguccugcgaccggaacgu
auuuauuagauauuagaccaaucgcagcaaugugauugagaugaaucaaa
guaacugaucggaucgagguuuaccucgauaaaucaucuaaguuucugcc
cuaucagcucucgaugguaguguauuggacuaccauggcagucacgggua
acggagaauuaggguucgauuccggagaaggagccugagaaacggcuacu
acaacuacgguucggcagcagggaagaaaauuggccaauccuaauucagg
gagccagugacaagaaauagcaagcugggaaacuuacguuucuacggcau
ugaaaugagaacaguguaaaucucuuagcgaggaacaauuggagggcaag
ucauggugccagcagccgcgguaauuccagcuccaauagcguauauuaaa
guuguugcaguuaaaaagcucguaguugaacuucuguucagguucauuuc
gauucgucgugugaaacuggacauacguuugcaaacuaaaaucggcguuc
gacuuagggaguaaacauuuuacugugaaaaaauuagaguguuccaggca
gguuuuagcccgaauacauuagcauggaauaauggaauaggacuaagucc
auuuuauugguucuuggauuugguaaugauuaauagggacaguugggggc
auuaguauuuaauagucagaggugaaauucuuggauuuauuaaggacuaa
cuaaugcgaaagcauuugccaaagauguuuucauuaaucaagaacgaaag
uuaggggaucaaagacgaucagauaccgucguagucuuaacuauaaacua
uaccgacucgggaucggcuggaauaaauguccagucggcaccguaugaga
aaucaaagucuuuggguucugggggaaguaugguacgcaagucugaaacu
uaaaggaauugacggaacagcacaccagaaguggaaccugcggcuuaauu
ugacucaacacggggaaacucacgagcgcaagacagagaagggauugaca
gauugagagcucuuucuugauucuuugggugguggugcauggccguucuu
aguugguggagugauuugucugguuaauuccguuaacgaacgagaccuua
accugcuaacuagucugcuuguaaauaacagguuguacuucuuagaggga
cuauugugcaauaagccaauggaaguuuaaggcaauaacaggucugugau
gccccuagacgugcucggccgcacgcgcguuacaaugacuggcgcaaaaa
guauuuccuguccugggaagguacggguaaucuuauuaauaccagucgug
uuagggauaguucuuuggaauuguggaucuugaacgaggaauuucuagua
agugcaagucaucagcuugcguugauuaugucccugccguuuguacacac
cgcccgucgcuuguaguaacgaauggucuggugaaccuucuggacugcga
cagcaauguugcggaaaaauaaguaaacccuaccauuuggaacaacaaga
agucguaacaagguaucuguaggugaaccugcagauggaucauua
...<<<<<.{.[[[[>>>>><.<.<<<<<<...<<<<.........<<<.
<<<..<<....<<<..<<........>>..>>>.>>......<<......
..<<<..<<..<<....<<<<..............<<.....<<.<<<..
...>>>.>>......>>.........<<<<<.<<<....>>>>>>>>.<<
<.<<<<<........(((((((<<<......>>>.....<......>..>
>>>>.>>..>...<<<<<<....>>>>>>...>>>>...>>>>..>>>.<
<<....<<<....<<<<<<<<.......>>>>>>>>>>>......>>>..
.<<<.<<<<....>>>>....>>>.>>.<<.<<<..........>>>.>>
..<<<....>>>.....>>>>>>.........<<<....<<<.....>>>
..>>>......>>>>.....<<<<<<.<<<<<<....>>>>>>..>>>.>
>>......<...<<.........>>...>.........<<<<<((.....
...<<<.....<<..))>>.......>>>..>>>>>..>>>>>>.>.>..
.......<<<[[.....<.<<...<<<.<<....<<<<<<<.<<<<<..<
<<....>>>.>>>>>.>>>>>>>....<<<<....<<<<..<<<<...>>
>>.>>>>....>>>>...<<..<..........<................
<.......>......>.........>....>>.........<<<<<<<<<
<....)))))))..>>>>>>>>>>.....>>....<<<<<<.<<...<<<
<..<<..<<<<<<<<...<<<......>>>......>>>>>>>>..>>..
.....<<....>>...>>>>...>>>>>.>>>...>>>...>>.>...<<
<<<<<<...<...<<<<.........>>>>...>>>>>>>>>........
.<<<.<<.<<<..<<<<<<<<<.......>>>>>>>>>..>>>...<<..
]]>>...>>.....>>>.>>>.<<<......<<.<<....>>>>....>>
>..]]]].}<<<<<.<<<.<<<.<<.<<<<<<..<<<.<<<<<<......
<<........>>..........<<<<<<<....<<<<<<.......<<.<
<<........>>>.>>.....>>>>>>...<<.<<<..<<<<<<<<<...
.<<<.<<<<<....>>>...<<<......>>>...>>.>>>....<<<<<
.<<..<<<<..<<<<.<<<<<<.....>>>>>>.>.>>>..>>>>.>>..
..<<<<..........>>>>.......>>>>>....>>>.>>>...>.>>
>>>>>.....>>>>>>>...>>.>>>>.>>>.....<<<<<<.......<
<.....<<<<<<<<....>>>.>>>>>....>>........>>>>>>...
...<....<<.<<<..........>>>.>>....>.....>>>>>>....
<<<<<<<<.......>>>>>>>>......>>...>>>.>>>>>>.>>...
.<..<<.<.<<<<<.....<<<<<<<<..<<<..<<.<..<...<<<<<<
<<....>>>>>>>>...>..>.>>..>>>..>>>>>>>>.....>>>>>.
.>.>>...>.....<<<<<<<<<....>>>>>>>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4v5o Crystal Structure of the Eukaryotic 40S Ribosomal Subunit in Complex with Initiation Factor 1.
Resolution3.93 Å
Binding residue
(original residue number in PDB)		K17 S20 R21 G22
Binding residue
(residue number reindexed from 1)		K16 S19 R20 G21
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0006412 translation
GO:0030490 maturation of SSU-rRNA
Cellular Component
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit

View graph for
Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:4v5o, PDBe:4v5o, PDBj:4v5o
PDBsum4v5o
PubMed21205638
UniProtQ234G5

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