Structure of PDB 9ja1 Chain B Binding Site BS01

Receptor Information

>9ja1 Chain B (length=1100) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

DESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTL
IISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKVFIGR
LPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSA
GNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTI
KATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVE
DGFVIQDRETALDFIGKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFL
GYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDI
FRYMQRTVELAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRY
TYSSTLSHLRRTNTPIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLM
SCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRN
PARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVED
DESLGHKELKVRKGHIAKLMATEYQDEYTWSSLLNEGLVEYIDAEEEESI
LIAMQPEDLEPDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPD
HNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAME
YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYM
DQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDV
IIGKTTPISSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKI
PQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTV
AHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMY
NGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRS
RDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIA
KLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYTDRSRD

Ligand information

>9ja1 Chain R (length=9) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

aucgagagg

.........

Receptor-Ligand Complex Structure

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Structure summary

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PDB	9ja1 The RNA polymerase II elongation complex from Saccharomyces cerevisiae
Resolution	2.98 Å
Binding residue (original residue number in PDB)	A477 Q481 Q776 K979 K987
Binding residue (residue number reindexed from 1)	A391 Q395 Q666 K856 K864

External links

PDB	RCSB:9ja1, PDBe:9ja1, PDBj:9ja1
PDBsum	9ja1
PubMed
UniProt	P08518\|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2 (Gene Name=RPB2)

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