Structure of PDB 9fhe Chain B Binding Site BS01

Receptor Information
>9fhe Chain B (length=301) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GLVPRGSQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSC
TVLSLLGAPCAFMGSMAPGHVADFLVADFRRRGVDVSQVAWQSKGDTPSS
CCIINNSNGNRTIVLHDTSLPDVSATDFEKVDLTQFKWIHIEGRNASEQV
KMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAK
HLGFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPP
PRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGI
V
Ligand information
Ligand IDA1ICK
InChIInChI=1S/C24H29F2N5O2S/c1-14(24(32)33)9-15-5-6-20(34-4)19(10-15)28-23-18(12-27)17(22(25)26)11-21(29-23)31-8-7-16(13-31)30(2)3/h5-6,10-11,14,16,22H,7-9,13H2,1-4H3,(H,28,29)(H,32,33)/t14-,16-/m0/s1
InChIKeyLPDOIXPRZOWBJV-HOCLYGCPSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CC(Cc1ccc(c(c1)Nc2c(c(cc(n2)N3CCC(C3)N(C)C)C(F)F)C#N)SC)C(=O)O
CACTVS 3.385CSc1ccc(C[C@H](C)C(O)=O)cc1Nc2nc(cc(C(F)F)c2C#N)N3CC[C@@H](C3)N(C)C
CACTVS 3.385CSc1ccc(C[CH](C)C(O)=O)cc1Nc2nc(cc(C(F)F)c2C#N)N3CC[CH](C3)N(C)C
OpenEye OEToolkits 2.0.7C[C@@H](Cc1ccc(c(c1)Nc2c(c(cc(n2)N3CC[C@@H](C3)N(C)C)C(F)F)C#N)SC)C(=O)O
FormulaC24 H29 F2 N5 O2 S
Name(2~{S})-3-[3-[[4-[bis(fluoranyl)methyl]-3-cyano-6-[(3~{S})-3-(dimethylamino)pyrrolidin-1-yl]pyridin-2-yl]amino]-4-methylsulfanyl-phenyl]-2-methyl-propanoic acid
ChEMBL
DrugBank
ZINC
PDB chain9fhe Chain B Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB9fhe Discovery of BI-9787, a potent zwitterionic ketohexokinase inhibitor with oral bioavailability.
Resolution2.313 Å
Binding residue
(original residue number in PDB)
A224 A226 E227 V250 T253 G257 C289
Binding residue
(residue number reindexed from 1)
A227 A229 E230 V253 T256 G260 C292
Annotation score1
External links
PDB RCSB:9fhe, PDBe:9fhe, PDBj:9fhe
PDBsum9fhe
PubMed39179180
UniProtP50053|KHK_HUMAN Ketohexokinase (Gene Name=KHK)

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