Structure of PDB 9f1n Chain B Binding Site BS01

Receptor Information
>9f1n Chain B (length=126) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SMNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVK
LNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNK
PGDDIVLMAEALEKLFLQKINELPTE
Ligand information
Ligand IDA1H9H
InChIInChI=1S/C64H91N11O7S/c1-44-59(46(3)82-70-44)50-24-27-54-53(38-50)68-56(28-21-47-19-25-52(26-20-47)81-37-15-30-71(7)8)74(54)36-35-72-31-33-73(34-32-72)42-58(78)65-29-14-12-10-9-11-13-16-57(77)69-61(64(4,5)6)63(80)75-41-51(76)39-55(75)62(79)66-40-48-17-22-49(23-18-48)60-45(2)67-43-83-60/h17-20,22-27,38,43,45,51,55,61,76,83H,9-16,21,28-37,39-42H2,1-8H3,(H,65,78)(H,66,79)(H,69,77)/t45?,51-,55+,61-/m1/s1
InChIKeySLAFFBHMXMQEFJ-RVARQPPYSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CC1N=C[SH]=C1c2ccc(CNC(=O)[CH]3C[CH](O)CN3C(=O)[CH](NC(=O)CCCCCCCCNC(=O)CN4CCN(CC4)CCn5c(CCc6ccc(OCCCN(C)C)cc6)nc7cc(ccc57)c8c(C)onc8C)C(C)(C)C)cc2
OpenEye OEToolkits 2.0.7Cc1c(c(on1)C)c2ccc3c(c2)nc(n3CCN4CCN(CC4)CC(=O)NCCCCCCCCC(=O)NC(C(=O)N5CC(CC5C(=O)NCc6ccc(cc6)C7=SC=NC7C)O)C(C)(C)C)CCc8ccc(cc8)OCCCN(C)C
OpenEye OEToolkits 2.0.7Cc1c(c(on1)C)c2ccc3c(c2)nc(n3CCN4CCN(CC4)CC(=O)NCCCCCCCCC(=O)N[C@H](C(=O)N5C[C@@H](C[C@H]5C(=O)NCc6ccc(cc6)C7=SC=NC7C)O)C(C)(C)C)CCc8ccc(cc8)OCCCN(C)C
CACTVS 3.385CC1N=C[SH]=C1c2ccc(CNC(=O)[C@@H]3C[C@@H](O)CN3C(=O)[C@@H](NC(=O)CCCCCCCCNC(=O)CN4CCN(CC4)CCn5c(CCc6ccc(OCCCN(C)C)cc6)nc7cc(ccc57)c8c(C)onc8C)C(C)(C)C)cc2
FormulaC64 H91 N11 O7 S
Name(2S,4R)-1-[(2S)-2-[9-[2-[4-[2-[2-[2-[4-[3-(dimethylamino)propoxy]phenyl]ethyl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)benzimidazol-1-yl]ethyl]piperazin-1-yl]ethanoylamino]nonanoylamino]-3,3-dimethyl-butanoyl]-N-[[4-(4-methyl-4H-1,3-thiazol-5-yl)phenyl]methyl]-4-oxidanyl-pyrrolidine-2-carboxamide
ChEMBL
DrugBank
ZINC
PDB chain9f1n Chain B Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB9f1n First bromodomain of BRD4 in complex with ISOX-DUAL based degrader 46
Resolution1.71 Å
Binding residue
(original residue number in PDB)
W81 P82 L92 N140 D145 I146 M149
Binding residue
(residue number reindexed from 1)
W40 P41 L51 N99 D104 I105 M108
Annotation score1
External links
PDB RCSB:9f1n, PDBe:9f1n, PDBj:9f1n
PDBsum9f1n
PubMed
UniProtO60885|BRD4_HUMAN Bromodomain-containing protein 4 (Gene Name=BRD4)

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