Structure of PDB 9bcu Chain B Binding Site BS01

Receptor Information
>9bcu Chain B (length=1103) Species: 311400 (Thermococcus kodakarensis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EPTLTPDELWLVMESYWKEKGFVRQHLDSYNAFIDHGLQDVVNEFGEVVP
DIPNFKVKFGKIRIGQPEFQEAQGQRRPLYPMDARIRNLTYSAPLYLEMI
PVVNGIEQEPVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGY
FIINGSERVIVSIEDLAPNKTLVERDERQNKVVAKVFSYRHGYRALITVE
RKKDGILYVTIPNVPKPVKFVYVMRALGLLTDKEIVEAVSDDPRIQQVLF
DNLEDASDISTQEEALDYIGRLALPGQPKEYRLRRAEHIIDNNLLPHMGV
DPENRRAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLKDL
FRVAFGQLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVLSERIE
HALATGSWPGGRTGVSQLLDRTNYMSTLSHLRRVTSPLSRDQPHFEARDL
HGTHWGRICPTETPEGPNCGLVKNLALMSQITTGIPEREVREYLMKMGVV
PIEERRPAPGLYRVYLNGVLIGTVEDGRKLVERIRADRRAGKISDVINVA
LYEDEEVKEVYINSDDGRVRRPLIVVENGKPKLTREHVEGIKNGTLTWSD
LIRMGVIEYLDAEEEENAYVATWPWEVTEEHTHLELMPAAILGIPASLVP
YPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSR
IMKAVGFEDRPAGQNFVVAVLSYHGYNMEDAVIINKASIERGLARSTFFR
TYEAEEKRYLGGQKDNFEVPSPNIQGYLGEKYYRHLDEDGLIFPESKVEG
KDVLVGRTSPPRFQGRRETSVTVRPSEKGVVDKVIVTETGDGTKLVKVTV
RDLRIPELGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIP
SRMTVGQLIEAIGGKVASLTGRRVDGTAFIGEPEEKLRKELEELGFKHSG
REIMYDGITGRRLEADIFIGVIYYQRLHHMVADKMHARSRGPVQVLTKQP
TEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCESCGH
LALEDKRRGKVYCPVCGEDERISKVEMSYAFKLLLDELKAMVIRPSLRLK
DRV
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB9bcu Structural basis of archaeal FttA-dependent transcription termination
Resolution2.2 Å
Binding residue
(original residue number in PDB)		R186 S447 Q450
Binding residue
(residue number reindexed from 1)		R178 S439 Q442
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0016779 nucleotidyltransferase activity
GO:0034062 5'-3' RNA polymerase activity
GO:0046872 metal ion binding
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:9bcu, PDBe:9bcu, PDBj:9bcu
PDBsum9bcu
PubMed
UniProtQ5JE32

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