Structure of PDB 9aym Chain B Binding Site BS01

Receptor Information
>9aym Chain B (length=812) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TVDSRIPTLIRNGLQTKKRSFFVVVGDHAKEAIVHLYYIMSSMDVRQNKS
VLWAYKKPFELFISLNDIRYCYYKETDKILGNTYGMCILQDFEAITPNIL
ARTIETVEGGGLVVLLLKGMTSLKQLYTMTMDVHARYRTEAHDDVIARFN
ERFLLSLGSCESCLVIDDELNVLPISGGKGVKPLPPPDEDEELSPAAKEL
KKIKDELEDTQPIGSLIKLARTVDQAKALLTFVDAIAEKTLRNTVTLTAA
RGRGKSAAMGVAIAAAVAYGYSNIFITSPSPENLKTLFEFVFKGFDALDY
KDHADYTIIQSTNPEFNKAIVRVNIHRNHRQTIQYIRPQDAHVLGQAELV
VIDEAAAIPLPLVKKLMGPYLVFMASTISGYEGTGRSLSLKLIKQLREQS
RSLKEITLSEPIRYAQGDNVEKWLNTLLCLDPDPSQCELLHVNRDTLFSF
HPVSEKFLQQMVALYVASHYKNSPNDLQLMSDAPAHELFVLTGPIQEGRL
PEPLCVIQVSLEGKISKQSILKSLSRGQQPAGDLIPWLVSQQFQDDEFAS
LSGARIVRIATNPDYMSMGYGSKALQLLVDYYEGKFALPPLFSKLSERRP
EKLDYVGVSYGLTQQLHKFWKRAQFVPVYLRQTANDLTGEHTCVMIRPLQ
DGNDPSWLGAFAADFHKRFLSLLSYKFREFPSILALTIEESANAGAMLDP
SNAPTELTKAELDQLFTPFDHKRLESYANGLLDYHVVLDLMPTIAQLYFT
GRLREAVKLSGLQQAILLALGLQRKDIDTLATELNLPGSQVLAIFMKIMR
KVTQHFGALVSG
Ligand information
Ligand IDA1AHN
InChIInChI=1S/C33H50N9O22P3S2/c1-33(2,13-60-67(57,58)64-66(55,56)59-10-18-25(63-65(52,53)54)24(48)31(62-18)42-15-39-21-27(34)37-14-38-28(21)42)26(49)29(50)36-5-3-19(45)35-6-8-68-11-16(44)12-69-20-4-7-41(32(51)40-20)30-23(47)22(46)17(9-43)61-30/h4,7,14-15,17-18,22-26,30-31,43,46-49H,3,5-6,8-13H2,1-2H3,(H,35,45)(H,36,50)(H,55,56)(H,57,58)(H2,34,37,38)(H2,52,53,54)/t17-,18+,22-,23+,24+,25-,26+,30+,31+/m0/s1
InChIKeyXSHNUOJAICKWRY-KAESTEPRSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[CH](O)C(=O)NCCC(=O)NCCSCC(=O)CSC4=NC(=O)N(C=C4)[CH]5O[CH](CO)[CH](O)[CH]5O
CACTVS 3.385CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[C@H](O)C(=O)NCCC(=O)NCCSCC(=O)CSC4=NC(=O)N(C=C4)[C@@H]5O[C@@H](CO)[C@H](O)[C@H]5O
ACDLabs 12.01OC1C(O)C(CO)OC1N1C=CC(=NC1=O)SCC(=O)CSCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O)OP(=O)(O)OCC1OC(n2cnc3c(N)ncnc32)C(O)C1OP(=O)(O)O
OpenEye OEToolkits 2.0.7CC(C)(COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)[C@@H](C(=O)NCCC(=O)NCCSCC(=O)CSC4=NC(=O)N(C=C4)[C@H]5[C@@H]([C@H]([C@@H](O5)CO)O)O)O
OpenEye OEToolkits 2.0.7CC(C)(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)C(C(=O)NCCC(=O)NCCSCC(=O)CSC4=NC(=O)N(C=C4)C5C(C(C(O5)CO)O)O)O
FormulaC33 H50 N9 O22 P3 S2
Name[[(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(3~{S})-4-[[3-[2-[3-[1-[(2~{R},3~{R},4~{R},5~{S})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-2-oxidanylidene-pyrimidin-4-yl]sulfanyl-2-oxidanylidene-propyl]sulfanylethylamino]-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] hydrogen phosphate
ChEMBL
DrugBank
ZINC
PDB chain9aym Chain B Residue 1101 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB9aym Molecular Basis for RNA Cytidine Acetylation by NAT10.
Resolution3.29 Å
Binding residue
(original residue number in PDB)
V636 I638 T640 M645 S646 G648 G650 S651 S726 Q732 L733 F736 W737 R739
Binding residue
(residue number reindexed from 1)
V557 I559 T561 M566 S567 G569 G571 S572 S609 Q615 L616 F619 W620 R622
Annotation score3
External links