Structure of PDB 8yjx Chain B Binding Site BS01

Receptor Information
>8yjx Chain B (length=490) Species: 197 (Campylobacter jejuni) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PAIKTEFLPPVRGQITDRNGTLLAINDLGFSISILDKELSELTNLFPDLF
IKVVDFIPYDEIIPHYSELNLNKTIKIDPVVKRKYPFGKLASHIIGYVGK
ANLQDVQENEIAKLSNYTGKSGIERYYNDILQGEKGTRVYKVNALNQEVE
QLSYTPAMSNDIELTIDIELQSYLTSLFEGNAGAAIIMNVNDGSILAAGS
FPEYDLNPFVTGISFKDWDELSNSLDHPFTNKLINGYYPPGSVVKMGVGL
SFLNSKNISPSTQYVCNGHGPVDLKHAIKYSCDVYFYNGSLQVGIDQISE
TLSRIGFGAKTGVDLPSEFVGTLPSKEWKMQRYRQSWFQGDTLNTAIGQG
NFLATPMQIARYTAQIAKGGEVIPHFLKSIEKKEIFTLFEKSQLPYIRDA
MYAVANEQGGTSYRYLHNLNVKVAAKTGTAQVEKQFEYYTRSHAWLTSYA
PYSKPKYVVTVLLEHGGRNITSGATVAKIYQKMIELGYFK
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain8yjx Chain B Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8yjx Structural and biochemical analysis of penicillin-binding protein 2 from Campylobacter jejuni.
Resolution2.95 Å
Binding residue
(original residue number in PDB)		H355 C368
Binding residue
(residue number reindexed from 1)		H269 C282
Annotation score1
Gene Ontology
Molecular Function
GO:0004180 carboxypeptidase activity
GO:0008658 penicillin binding
GO:0009002 serine-type D-Ala-D-Ala carboxypeptidase activity
GO:0071972 peptidoglycan L,D-transpeptidase activity
Biological Process
GO:0009252 peptidoglycan biosynthetic process
GO:0071555 cell wall organization
Cellular Component
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8yjx, PDBe:8yjx, PDBj:8yjx
PDBsum8yjx
PubMed38581948
UniProtA0A1Y2P428

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