Structure of PDB 8yf1 Chain B Binding Site BS01

Receptor Information
>8yf1 Chain B (length=567) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PGGRGEAQRRKEREELAQQYEAILRECGHGRFQWTLYFVLGLALMADGVE
VFVVGFVLPSAEKDMCLSDSNKGMLGLIVYLGMMVGAFLWGGLADRLGRR
QCLLISLSVNSVFAFFSSFVQGYGTFLFCRLLSGVGIGGSIPIVFSYFSE
FLAQEKRGEHLSWLCMFWMIGGVYAAAMAWAIIPHYGWSFQMGSAYQFHS
WRVFVLVCAFPSVFAIGALTTQPESPRFFLENGKHDEAWMVLKQVHDTNM
RAKGHPERVFSVTHIKTIHQEDTWYQRWGVRALSLGGQVWGNFLSCFGPE
YRRITLMMMGVWFTMSFSYYGLTVWFPDMIRHLQAVDYASRTKVFPGERV
EHVTFNFTLENQIHRGGQYFNDKFIGLRLKSVSFEDSLFEECYFEDVTSS
NTFFRNCTFINTVFYNTDLFEYKFVNSRLINSTFLHNKEGCPLDVTGTGE
GAYMVYFVSFLGTLAVLPGNIVSALLMDKIGRLRMLAGSSVMSCVSCFFL
SFGNSESAMIALLCLFGGVSIASWNALDVLTVELYPSDKRTTAFGFLNAL
CKLAAVLGISIFTSFVG
Ligand information
Ligand IDVLX
InChIInChI=1S/C11H20N2O2/c1-3-5-8-6-10(14)13(7-8)9(4-2)11(12)15/h8-9H,3-7H2,1-2H3,(H2,12,15)/t8-,9+/m1/s1
InChIKeyMSYKRHVOOPPJKU-BDAKNGLRSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CCC[CH]1CN([CH](CC)C(N)=O)C(=O)C1
OpenEye OEToolkits 2.0.7CCC[C@@H]1CC(=O)N(C1)[C@@H](CC)C(=O)N
CACTVS 3.385CCC[C@H]1CN([C@@H](CC)C(N)=O)C(=O)C1
OpenEye OEToolkits 2.0.7CCCC1CC(=O)N(C1)C(CC)C(=O)N
FormulaC11 H20 N2 O2
Name(2S)-2-[(4R)-2-oxidanylidene-4-propyl-pyrrolidin-1-yl]butanamide
ChEMBL
DrugBank
ZINC
PDB chain8yf1 Chain B Residue 801 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8yf1 Cryo-EM structure of human SV2A in complex with Brivaracetam
Resolution3.38 Å
Binding residue
(original residue number in PDB)		I273 F277 C297 W300 I663 W666 N667
Binding residue
(residue number reindexed from 1)		I141 F145 C165 W168 I521 W524 N525
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0019901 protein kinase binding
Biological Process
GO:0006836 neurotransmitter transport
GO:0006874 intracellular calcium ion homeostasis
GO:0014052 regulation of gamma-aminobutyric acid secretion
GO:0016082 synaptic vesicle priming
Cellular Component
GO:0005783 endoplasmic reticulum
GO:0005886 plasma membrane
GO:0005911 cell-cell junction
GO:0008021 synaptic vesicle
GO:0016020 membrane
GO:0030425 dendrite
GO:0030672 synaptic vesicle membrane
GO:0031410 cytoplasmic vesicle
GO:0031594 neuromuscular junction
GO:0042995 cell projection
GO:0043005 neuron projection
GO:0043025 neuronal cell body
GO:0045202 synapse
GO:0048786 presynaptic active zone
GO:0098793 presynapse
GO:0098978 glutamatergic synapse
GO:0098982 GABA-ergic synapse

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8yf1, PDBe:8yf1, PDBj:8yf1
PDBsum8yf1
PubMed
UniProtQ7L0J3|SV2A_HUMAN Synaptic vesicle glycoprotein 2A (Gene Name=SV2A)

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