Structure of PDB 8x7p Chain B Binding Site BS01

Receptor Information
>8x7p Chain B (length=55) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KKGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGF
VKKDQ
Ligand information
Ligand IDV79
InChIInChI=1S/C34H36N4O6.Cu/c1-7-19-15(3)23-12-25-17(5)21(9-10-29(39)40)32(37-25)22(11-30(41)42)33-31(34(43)44)18(6)26(38-33)14-28-20(8-2)16(4)24(36-28)13-27(19)35-23;/h7,12-14,17,21H,1,8-11H2,2-6H3,(H5,35,36,37,38,39,40,41,42,43,44);/q;+4/p-2/t17-,21+;/m0./s1
InChIKeyYJPOIBSDHKWDGX-CQVJSGDESA-L
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CCC1=C(c2cc3c(c(c4n3[Cu]56[n+]2c1cc7n5c(c(c8[n+]6c(c4)C(C8CCC(=O)O)C)CC(=O)O)c(c7C)C(=O)O)C)C=C)C
CACTVS 3.385CCC1=C(C)C2=Cc3n4c(C=C5[CH](C)[CH](CCC(O)=O)C6=[N+]5[Cu]47[N]8C(=CC1=[N+]27)C(=C(C(O)=O)C8=C6CC(O)=O)C)c(C)c3C=C
CACTVS 3.385CCC1=C(C)C2=Cc3n4c(C=C5[C@@H](C)[C@@H](CCC(O)=O)C6=[N@+]5[Cu@@]47[N@]8C(=CC1=[N@@+]27)C(=C(C(O)=O)C8=C6CC(O)=O)C)c(C)c3C=C
FormulaC34 H34 Cu N4 O6
Namecopper;
trisodium;
18-(2-carboxylatoethyl)-20-(carboxylatomethyl)-12-ethenyl-7-ethyl-3,8,13,17-tetramethyl-17,18-dihydroporphyrin-21,23-diide-2-carboxylate
ChEMBL
DrugBank
ZINC
PDB chain8x7p Chain B Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8x7p Binding adaptability of chemical ligands to polymorphic alpha-synuclein amyloid fibrils.
Resolution2.7 Å
Binding residue
(original residue number in PDB)
H50 V66
Binding residue
(residue number reindexed from 1)
H6 V22
Annotation score1
External links
PDB RCSB:8x7p, PDBe:8x7p, PDBj:8x7p
PDBsum8x7p
PubMed39172784
UniProtP37840|SYUA_HUMAN Alpha-synuclein (Gene Name=SNCA)

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