Structure of PDB 8x1a Chain B Binding Site BS01

Receptor Information
>8x1a Chain B (length=319) Species: 345073 (Vibrio cholerae O395) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SHMEGRLVVYCSATNAMCEAGTKAFAEKYNVNTSFVRNGSGSTLAKIDAE
KNNPRADVWYGGTLDPQSQAGEMDLLQAYQSPELANIMEGFRDPAKRKGN
YSSAVYMGILGFGVNTERLAQKGIPIPRCWADLTKPEYKGEIQISDPQSS
GTAYTALATFIQLWDEPTAFEYFKKLDKNVSQYTKSGVTPSRNSARGEVA
IGIGFLHDYSLEQAKGAPLELISPCEGTGYELGGVSIIKGARNLDNAKLF
VDWVLSKEGQEVAWKQGDSYQILTNTQAEQSPNALDPKTLKLINYDMETY
GSSDERKRLITKWVNEIKM
Ligand information
Ligand IDG6P
InChIInChI=1S/C6H13O9P/c7-3-2(1-14-16(11,12)13)15-6(10)5(9)4(3)8/h2-10H,1H2,(H2,11,12,13)/t2-,3-,4+,5-,6+/m1/s1
InChIKeyNBSCHQHZLSJFNQ-DVKNGEFBSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)O)OP(=O)(O)O
CACTVS 3.341O[CH]1O[CH](CO[P](O)(O)=O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341O[C@H]1O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H](O)[C@H]1O
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)OP(=O)(O)O
ACDLabs 10.04O=P(O)(O)OCC1OC(O)C(O)C(O)C1O
FormulaC6 H13 O9 P
Name6-O-phosphono-alpha-D-glucopyranose;
ALPHA-D-GLUCOSE-6-PHOSPHATE;
6-O-phosphono-alpha-D-glucose;
6-O-phosphono-D-glucose;
6-O-phosphono-glucose
ChEMBL
DrugBankDB02007
ZINCZINC000003875375
PDB chain8x1a Chain B Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8x1a Crystal structure of periplasmic G6P binding protein VcA0625
Resolution1.604 Å
Binding residue
(original residue number in PDB)
S9 T11 R34 G36 S37 G59 Y103 S147 G148 T149 S183 G184 V185 H204 D205 E228 Q268
Binding residue
(residue number reindexed from 1)
S12 T14 R37 G39 S40 G62 Y106 S150 G151 T152 S186 G187 V188 H207 D208 E231 Q271
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0030975 thiamine binding
GO:0030976 thiamine pyrophosphate binding
Biological Process
GO:0015888 thiamine transport
Cellular Component
GO:0030288 outer membrane-bounded periplasmic space

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:8x1a, PDBe:8x1a, PDBj:8x1a
PDBsum8x1a
PubMed38704889
UniProtA0A0H3AFK0

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