Structure of PDB 8www Chain B Binding Site BS01

Receptor Information
>8www Chain B (length=497) Species: 67386 (Streptomyces yokosukanensis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VNMLVKALEERADAVPDLTALECEGVELTFRAVHERANRLARHLVASGVG
PDRVVAVMLPRSTDLLVTLLAVLKAGGAYLALDPEHPAERVAFQVRDAAP
VVLVTSARIDADRTDLGIARVVLDDPGTAETLAALPAGHLTDAERAAPAG
PEDLAYVIYTSGSTGTPKGVEIPVRALHNLLEAMRERLSLGPGDRMLSVT
TATFDMSVPELFLPYYTGARAVIAPRATGQDPRELGDLIVRREIGTAQAT
PTHWHMLATVSPEALRGLRILIGGEALSEKLAATLLDLGAEVVQWYGPTE
TTVWSTVHPVTGPADAAVIGKPLRNTRLYVLDEDLVPVEQGTEGELFIAG
AGVARGYLNRPELTAERFLPDRFGTGDALMYRTGDVVRMRPDGDLEYVGR
AKLHGFRVELGEIEAALERSEDVDQASATVREDRPGDRRLVAYVTAATGR
VPDVRELRNFVAQTLPLYMVPTAVVALEEFPLTPNGKLDRKALPAPV
Ligand information
Ligand IDYG3
InChIInChI=1S/C13H19N7O7S/c1-5(14)12(23)19-28(24,25)26-2-6-8(21)9(22)13(27-6)20-4-18-7-10(15)16-3-17-11(7)20/h3-6,8-9,13,21-22H,2,14H2,1H3,(H,19,23)(H2,15,16,17)/t5-,6-,8-,9-,13-/m1/s1
InChIKeyCWWYMWDIYBJVLP-ZOBJURTISA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7C[C@H](C(=O)NS(=O)(=O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)N
CACTVS 3.385C[CH](N)C(=O)N[S](=O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23
CACTVS 3.385C[C@@H](N)C(=O)N[S](=O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23
OpenEye OEToolkits 2.0.7CC(C(=O)NS(=O)(=O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)N
FormulaC13 H19 N7 O7 S
Name[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl N-[(2R)-2-azanylpropanoyl]sulfamate;
5'-O-(N-(D-ALANYL)-SULFAMOYL)ADENOSINE
ChEMBL
DrugBank
ZINC
PDB chain8www Chain B Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8www Functional Application of the Single-Module NRPS-like d-Alanyltransferase in Maytansinol Biosynthesis
Resolution2.78 Å
Binding residue
(original residue number in PDB)
D212 M213 G281 A283 Y303 G304 P305 T306 V310 W311 Y404 N496 K498
Binding residue
(residue number reindexed from 1)
D205 M206 G274 A276 Y296 G297 P298 T299 V303 W304 Y397 N485 K487
Annotation score1
External links