Structure of PDB 8wii Chain B Binding Site BS01

Receptor Information
>8wii Chain B (length=401) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQ
EVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIF
NQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEE
QIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADL
AVALEENNIPFEYQLGEGAFYAPKIEFTLYDCLDRAWQCGTVQLDFSLPS
RLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQ
VVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVP
YMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSRSLKQLE
E
Ligand information
Ligand IDWE3
InChIInChI=1S/C17H14N2O7/c20-12-3-1-2-11(15(12)21)16(22)18-14-13(26-17(14)23)8-9-4-6-10(7-5-9)19(24)25/h1-7,13-14,20-21H,8H2,(H,18,22)/t13-,14+/m1/s1
InChIKeyAINNQKIVZOTQBB-KGLIPLIRSA-N
SMILES
SoftwareSMILES
CACTVS 3.385Oc1cccc(c1O)C(=O)N[C@H]2[C@@H](Cc3ccc(cc3)[N+]([O-])=O)OC2=O
OpenEye OEToolkits 2.0.7c1cc(c(c(c1)O)O)C(=O)NC2C(OC2=O)Cc3ccc(cc3)[N+](=O)[O-]
CACTVS 3.385Oc1cccc(c1O)C(=O)N[CH]2[CH](Cc3ccc(cc3)[N+]([O-])=O)OC2=O
OpenEye OEToolkits 2.0.7c1cc(c(c(c1)O)O)C(=O)N[C@H]2[C@H](OC2=O)Cc3ccc(cc3)[N+](=O)[O-]
FormulaC17 H14 N2 O7
Name~{N}-[(2~{R},3~{S})-2-[(4-nitrophenyl)methyl]-4-oxidanylidene-oxetan-3-yl]-2,3-bis(oxidanyl)benzamide;
Obafluorin
ChEMBL
DrugBank
ZINC
PDB chain8wii Chain B Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8wii Specific glycine-dependent enzyme motion determines the potency of conformation selective inhibitors of threonyl-tRNA synthetase.
Resolution2.98 Å
Binding residue
(original residue number in PDB)
C334 F379 Q381 D383 T482 Q484 H511 R512 S517
Binding residue
(residue number reindexed from 1)
C93 F138 Q140 D142 T241 Q243 H270 R271 S276
Annotation score1
External links