Structure of PDB 8wa1 Chain B Binding Site BS01

Receptor Information
>8wa1 Chain B (length=998) Species: 4097 (Nicotiana tabacum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVE
TYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIP
LMNSLGTSIVNGIYRIVINQILQSPGIYYRSELDHNGISVYTGTIISDWG
GRSELEIDRKARIWARVSRKQKISILVLSSAMGLNLREILENVCYPEIFL
SFLFFQQRCELGRIGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGLK
FGMGALDDMNHLKNKRIRSVADLLQDQFGLALVRLENVVRGTICGAIRHK
LIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLG
PGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHW
GSLESPFYEISERSTGVRMLYLSPGRDEYYMVAAGNSLALNQDIQEEQVV
PARYRQEFLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSN
MQRQAVPLSRSEKCIVGTGLERQAALDSGALAIAEREGRVVYTNTDKILL
AGNGDILSIPLVIYQRSNKNTCMHQKLQVPRGKCIKKGQILADGAATVGG
ELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHV
TSQGPEKVTNEIPHLEAHLLRNLDKNGIVMLGSWVETGDILVGKLTPQSK
ETCLKLPIGGRGRVIDVRWIQKRGGSSYNPETIRVYILQKREIKVGDKVA
GRHGNKGIISKILPRQDMPYLQDGRSVDMVFNPLGVPSRMNVGQIFECSL
GLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEY
PGKSRIFDGRTGNPFEQPVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQ
QPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLG
TTIIGGTIPNPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKE
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8wa1 Cryo-EM structures of the plant plastid-encoded RNA polymerase.
Resolution2.8 Å
Binding residue
(original residue number in PDB)		R404 T405
Binding residue
(residue number reindexed from 1)		R357 T358
Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0016779 nucleotidyltransferase activity
GO:0032549 ribonucleoside binding
GO:0034062 5'-3' RNA polymerase activity
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex
GO:0009507 chloroplast

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8wa1, PDBe:8wa1, PDBj:8wa1
PDBsum8wa1
PubMed38428393
UniProtP06271|RPOB_TOBAC DNA-directed RNA polymerase subunit beta (Gene Name=rpoB)

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