Structure of PDB 8vq4 Chain B Binding Site BS01

Receptor Information
>8vq4 Chain B (length=270) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
IAPSRGSPLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRA
ILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSL
FIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTI
VSWLNVYMQVAYLQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALY
HFSSSELMQKVSGYQWCDIENCVKWMVPFAMVIRETGSSKLKHFRGVADE
DAHNIQTHRDSLDLLDKARA
Ligand information
Ligand IDA1AC5
InChIInChI=1S/C37H52N6O5/c1-25(48-16-15-26-11-7-5-8-12-26)31(33(45)38-4)40-32(44)30-21-41(22-37(30)23-42(24-37)35(47)29-17-36(29,2)3)34(46)28-18-39-43(20-28)19-27-13-9-6-10-14-27/h6,9-10,13-14,18,20,25-26,29-31H,5,7-8,11-12,15-17,19,21-24H2,1-4H3,(H,38,45)(H,40,44)/t25-,29-,30?,31+/m1/s1
InChIKeyUVZNYNNQQMCMKG-XDOPDHMJSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7C[C@H]([C@@H](C(=O)NC)NC(=O)[C@@H]1CN(CC12CN(C2)C(=O)[C@H]3CC3(C)C)C(=O)c4cnn(c4)Cc5ccccc5)OCCC6CCCCC6
CACTVS 3.385CNC(=O)[CH](NC(=O)[CH]1CN(CC12CN(C2)C(=O)[CH]3CC3(C)C)C(=O)c4cnn(Cc5ccccc5)c4)[CH](C)OCCC6CCCCC6
ACDLabs 12.01CNC(=O)C(NC(=O)C1CN(CC21CN(C2)C(=O)C1CC1(C)C)C(=O)c1cn(Cc2ccccc2)nc1)C(C)OCCC1CCCCC1
CACTVS 3.385CNC(=O)[C@@H](NC(=O)[C@@H]1CN(CC12CN(C2)C(=O)[C@H]3CC3(C)C)C(=O)c4cnn(Cc5ccccc5)c4)[C@@H](C)OCCC6CCCCC6
OpenEye OEToolkits 2.0.7CC(C(C(=O)NC)NC(=O)C1CN(CC12CN(C2)C(=O)C3CC3(C)C)C(=O)c4cnn(c4)Cc5ccccc5)OCCC6CCCCC6
FormulaC37 H52 N6 O5
Name(8R)-6-(1-benzyl-1H-pyrazole-4-carbonyl)-N-[(2S,3R)-3-(2-cyclohexylethoxy)-1-(methylamino)-1-oxobutan-2-yl]-2-[(1S)-2,2-dimethylcyclopropane-1-carbonyl]-2,6-diazaspiro[3.4]octane-8-carboxamide
ChEMBL
DrugBank
ZINC
PDB chain8vq4 Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8vq4 Expanding the ligandable proteome by paralog hopping with covalent probes.
Resolution1.9 Å
Binding residue
(original residue number in PDB)
W95 Q240 Y243 H343
Binding residue
(residue number reindexed from 1)
W14 Q159 Y162 H253
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:8vq4, PDBe:8vq4, PDBj:8vq4
PDBsum8vq4
PubMed38293178
UniProtP24864|CCNE1_HUMAN G1/S-specific cyclin-E1 (Gene Name=CCNE1)

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