Structure of PDB 8vq3 Chain B Binding Site BS01

Receptor Information
>8vq3 Chain B (length=270) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
IAPSRGSPLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRA
ILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSL
FIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTI
VSWLNVYMQVAYLNYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALY
HFSSSELMQKVSGYQWCDIENCVKWMVPFAMVIRETGSSKLKHFRGVADE
DAHNIQTHRDSLDLLDKARA
Ligand information
Ligand IDA1AC4
InChIInChI=1S/C32H47N5O6S/c1-21(43-16-22-7-5-4-6-8-22)26(30(41)35-9-11-42-12-10-35)34-27(38)24-15-36(29(40)25-14-33-20-44-25)17-32(24)18-37(19-32)28(39)23-13-31(23,2)3/h14,20-24,26H,4-13,15-19H2,1-3H3,(H,34,38)/t21-,23-,24?,26+/m1/s1
InChIKeyNGKYDOYICDCFRF-NZMKUBJDSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01O=C(N1CC2(CN(C2)C(=O)C2CC2(C)C)C(C1)C(=O)NC(C(=O)N1CCOCC1)C(C)OCC1CCCCC1)c1cncs1
OpenEye OEToolkits 2.0.7CC(C(C(=O)N1CCOCC1)NC(=O)C2CN(CC23CN(C3)C(=O)C4CC4(C)C)C(=O)c5cncs5)OCC6CCCCC6
OpenEye OEToolkits 2.0.7C[C@H]([C@@H](C(=O)N1CCOCC1)NC(=O)[C@@H]2CN(CC23CN(C3)C(=O)[C@H]4CC4(C)C)C(=O)c5cncs5)OCC6CCCCC6
CACTVS 3.385C[CH](OCC1CCCCC1)[CH](NC(=O)[CH]2CN(CC23CN(C3)C(=O)[CH]4CC4(C)C)C(=O)c5scnc5)C(=O)N6CCOCC6
CACTVS 3.385C[C@@H](OCC1CCCCC1)[C@H](NC(=O)[C@@H]2CN(CC23CN(C3)C(=O)[C@H]4CC4(C)C)C(=O)c5scnc5)C(=O)N6CCOCC6
FormulaC32 H47 N5 O6 S
Name(8R)-N-[(2S,3R)-3-(cyclohexylmethoxy)-1-(morpholin-4-yl)-1-oxobutan-2-yl]-2-[(1S)-2,2-dimethylcyclopropane-1-carbonyl]-6-(1,3-thiazole-5-carbonyl)-2,6-diazaspiro[3.4]octane-8-carboxamide
ChEMBL
DrugBank
ZINC
PDB chain8vq3 Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8vq3 Expanding the ligandable proteome by paralog hopping with covalent probes.
Resolution1.84 Å
Binding residue
(original residue number in PDB)
P91 W95 N236 Q240 Y243 F260 H343
Binding residue
(residue number reindexed from 1)
P10 W14 N155 Q159 Y162 F170 H253
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:8vq3, PDBe:8vq3, PDBj:8vq3
PDBsum8vq3
PubMed38293178
UniProtP24864|CCNE1_HUMAN G1/S-specific cyclin-E1 (Gene Name=CCNE1)

[Back to BioLiP]