Structure of PDB 8vdw Chain B Binding Site BS01

Receptor Information
>8vdw Chain B (length=332) Species: 29466 (Veillonella parvula) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QPSQVGTYEKILTIANRIMNGGEITKEEAIELIHTSDDDTMILLAMADKI
RQHFNDNSVDVCAIVNARSGKCPENCKFCAQSAHHNTGVQEYPFMDEESI
LQAARKAKEAGAIRFSIVTSGRNTNNPDEFDQIIHVLGRIKNEIGLEICC
SLGLLTYEQALKLKEVGVTRYHSNIETAPSHFPDICTTHSYEDKMFTIDN
AQKAGIRVCSGGILGLNETLEQRVEMAFELKRLHIDSVPLNILNPVKGTP
FESNEALRPLDILRTFAVFRFILPNALIRTAGGREVNLRDLQAYALKGGL
NGIMVGGYLTTGGRSPQDDLQMIQDLELTRNT
Ligand information
Ligand IDQ46
InChIInChI=1S/4Fe.H2S.4S/h;;;;1H2;;;;/q;;;+1;;4*+1/p-1
InChIKeyIBBAXWHZAAYJDG-UHFFFAOYSA-M
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6S[Fe]12[S+]3[Fe]4[S+]1[Fe]5[S+]4[Fe]3[S+]25
CACTVS 3.385S[Fe]12[S+]3[Fe]4[S+]5[Fe]3[S+]1[Fe]5[S+]24
FormulaFe4 H S5
NameFe4 H S5
ChEMBL
DrugBank
ZINC
PDB chain8vdw Chain B Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8vdw X-Ray Crystal Structure of the biotin synthase from V. parvula
Resolution1.807 Å
Binding residue
(original residue number in PDB)		C69 I71 S123 C156 H179 C216 R286 M311
Binding residue
(residue number reindexed from 1)		C62 I64 S116 C149 H172 C209 R279 M304
Annotation score2
Enzymatic activity
Enzyme Commision number 2.8.1.6: biotin synthase.
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Tue Nov 26 21:47:21 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8vdw', asym_id = 'B', bs = 'BS01', title = 'X-Ray Crystal Structure of the biotin synthase from V. parvula'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8vdw', asym_id='B', bs='BS01', title='X-Ray Crystal Structure of the biotin synthase from V. parvula')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003824,0004076,0009102,0051536', uniprot = '', pdbid = '8vdw', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003824,0004076,0009102,0051536', uniprot='', pdbid='8vdw', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>