Structure of PDB 8v9b Chain B Binding Site BS01

Receptor Information
>8v9b Chain B (length=84) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DCYHGDGQSYRGSFSTTVTGRTCQSWSSMTPHWHQRTTEYYPNGGLTRNY
CRNPDAEIRPWCYTMDPSVRWEYCNLTQCPVMES
Ligand information
Ligand IDA1AAM
InChIInChI=1S/C27H34N4O5/c32-25(33)23(19-7-9-28-15-19)13-17-3-1-5-21(11-17)30-27(36)31-22-6-2-4-18(12-22)14-24(26(34)35)20-8-10-29-16-20/h1-6,11-12,19-20,23-24,28-29H,7-10,13-16H2,(H,32,33)(H,34,35)(H2,30,31,36)/t19-,20-,23-,24-/m0/s1
InChIKeyHICCAHJBPZUBFA-TZYAJKAJSA-N
SMILES
SoftwareSMILES
CACTVS 3.385OC(=O)[CH](Cc1cccc(NC(=O)Nc2cccc(C[CH]([CH]3CCNC3)C(O)=O)c2)c1)[CH]4CCNC4
ACDLabs 12.01O=C(O)C(Cc1cc(ccc1)NC(=O)Nc1cc(CC(C2CCNC2)C(=O)O)ccc1)C1CCNC1
OpenEye OEToolkits 2.0.7c1cc(cc(c1)NC(=O)Nc2cccc(c2)C[C@@H]([C@H]3CCNC3)C(=O)O)C[C@@H]([C@H]4CCNC4)C(=O)O
OpenEye OEToolkits 2.0.7c1cc(cc(c1)NC(=O)Nc2cccc(c2)CC(C3CCNC3)C(=O)O)CC(C4CCNC4)C(=O)O
CACTVS 3.385OC(=O)[C@@H](Cc1cccc(NC(=O)Nc2cccc(C[C@@H]([C@H]3CCNC3)C(O)=O)c2)c1)[C@H]4CCNC4
FormulaC27 H34 N4 O5
Name(2S,2'S)-3,3'-[carbonylbis(azanediyl-3,1-phenylene)]bis{2-[(3R)-pyrrolidin-1-ium-3-yl]propanoate};
LY3441732
ChEMBL
DrugBank
ZINC
PDB chain8v9b Chain B Residue 101 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8v9b Lipoprotein(a) Kringle IV domains 7 and 8 - Lp(a) KIV7 and KIV8 in complex with LY3353871, LY3441732 and LY3473329
Resolution1.19 Å
Binding residue
(original residue number in PDB)
Q34 D54 E56 W60 Y62 R69 W70
Binding residue
(residue number reindexed from 1)
Q35 D55 E57 W61 Y63 R70 W71
Annotation score1
Enzymatic activity
Enzyme Commision number 3.4.21.-
External links
PDB RCSB:8v9b, PDBe:8v9b, PDBj:8v9b
PDBsum8v9b
PubMed38720069
UniProtP08519|APOA_HUMAN Apolipoprotein(a) (Gene Name=LPA)

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