Structure of PDB 8v0c Chain B Binding Site BS01

Receptor Information
>8v0c Chain B (length=442) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GNPFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDW
LVKQYPPEFRKKPILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFG
THHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGTH
KSGESPTHFKADLISYLMAYNAPSLKEWIDVIHKHDLSETNVYLIGSTPG
RFQGSQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESK
WLCSEFKESMLTLGKESSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQ
TAEKQNWLHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKIAWFLVTSA
NLSKAAWGALEKNGTQLMIRSYELGVLFLPSAFGLDSFKVKQKFFAGSQE
PMATFPVPYDLPPELYGSKDRPWIWNIPYVKAPDTHGNMWVP
Ligand information
Ligand IDYE3
InChIInChI=1S/C18H15FN2O5S/c19-27(25,26)9-8-20-15-7-2-1-4-11(15)12-5-3-6-13-16(12)21-10-14(17(13)22)18(23)24/h1-7,10,20H,8-9H2,(H,21,22)(H,23,24)
InChIKeyGBGLBZXZHJILEF-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01FS(=O)(=O)CCNc1ccccc1c1cccc2c1NC=C(C2=O)C(=O)O
OpenEye OEToolkits 2.0.7c1ccc(c(c1)c2cccc3c2NC=C(C3=O)C(=O)O)NCCS(=O)(=O)F
CACTVS 3.385OC(=O)C1=CNc2c(cccc2c3ccccc3NCC[S](F)(=O)=O)C1=O
FormulaC18 H15 F N2 O5 S
Name(8M)-8-(2-{[2-(fluorosulfonyl)ethyl]amino}phenyl)-4-oxo-1,4-dihydroquinoline-3-carboxylic acid
ChEMBL
DrugBank
ZINC
PDB chain8v0c Chain B Residue 704 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8v0c Structures of TDP1 complexed with inhibitors
Resolution1.62 Å
Binding residue
(original residue number in PDB)
Y204 C205 H263 K265 N283 P461 H493 W590
Binding residue
(residue number reindexed from 1)
Y44 C45 H103 K105 N123 P296 H328 W425
Annotation score1
External links
PDB RCSB:8v0c, PDBe:8v0c, PDBj:8v0c
PDBsum8v0c
PubMed
UniProtQ9NUW8|TYDP1_HUMAN Tyrosyl-DNA phosphodiesterase 1 (Gene Name=TDP1)

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