Structure of PDB 8uzv Chain B Binding Site BS01

Receptor Information
>8uzv Chain B (length=442) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NPFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDWL
VKQYPPEFRKKPILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGT
HHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGTHK
SGESPTHFKADLISYLMAYNAPSLKEWIDVIHKHDLSETNVYLIGSTPGR
FQGSQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKW
LCSEFKESMLTLGKESSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQT
AEKQNWLHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKIAWFLVTSAN
LSKAAWGALEKNGTQLMIRSYELGVLFLPSAFGLDSFKVKQKFFAGSQEP
MATFPVPYDLPPELYGSKDRPWIWNIPYVKAPDTHGNMWVPS
Ligand information
Ligand IDY9G
InChIInChI=1S/C12H11FN2O5S/c13-21(19,20)5-4-14-9-3-1-2-7-10(9)15-6-8(11(7)16)12(17)18/h1-3,6,14H,4-5H2,(H,15,16)(H,17,18)
InChIKeyIOSKNPKLXSTGAI-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.385OC(=O)C1=CNc2c(NCC[S](F)(=O)=O)cccc2C1=O
OpenEye OEToolkits 2.0.7c1cc2c(c(c1)NCCS(=O)(=O)F)NC=C(C2=O)C(=O)O
ACDLabs 12.01FS(=O)(=O)CCNc1cccc2c1NC=C(C2=O)C(=O)O
FormulaC12 H11 F N2 O5 S
Name8-{[2-(fluorosulfonyl)ethyl]amino}-4-oxo-1,4-dihydroquinoline-3-carboxylic acid
ChEMBL
DrugBank
ZINC
PDB chain8uzv Chain B Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8uzv Structure of TDP1 catalytic domain complexed with compound IB02
Resolution1.846 Å
Binding residue
(original residue number in PDB)
Y204 H263 K265 N283 P461 H493 W590
Binding residue
(residue number reindexed from 1)
Y43 H102 K104 N122 P295 H327 W424
Annotation score1
External links
PDB RCSB:8uzv, PDBe:8uzv, PDBj:8uzv
PDBsum8uzv
PubMed
UniProtQ9NUW8|TYDP1_HUMAN Tyrosyl-DNA phosphodiesterase 1 (Gene Name=TDP1)

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