Structure of PDB 8uh6 Chain B Binding Site BS01

Receptor Information
>8uh6 Chain B (length=386) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PNIINFDTSLPTSHTYLGADMEEFHGRTLHDDDSCQVIPVLPQVMMILIP
GQTLPLQLFHPQEVSMVRNLIQKDRTFAVLAYSNVQEREAQFGTTAEIYA
YREEQDFGIEIVKVKAIGRQRFKVLELRTQSDGIQQAKVQILPECVLPST
MSAVQLESLNKCQIFPSKPVSREDQCSYKWWQKYQKRKFHCANLTSWPRW
LYSLYDAETLMDRIKKQLREWDENLKDDSLPSNPIDFSYRVAACLPIDDV
LRIQLLKIGSAIQRLRCELDIMNKCTSLCCKQCQETEITTKNEIFSLSLC
GPMAAYVNPHGYVHETLTVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKI
CASHIGWKFTATKKDMSPQKFWGLTRSALLPTIPDT
Ligand information
Ligand IDWO8
InChIInChI=1S/C46H50ClN7O11S2/c1-46(2)23-32(48-31-9-5-7-29(21-31)40-38(47)39(65-24-37(56)57)41(66-40)43(59)60)16-19-53(46)67(63,64)25-26-6-4-8-30(20-26)49-44(61)52-17-14-27(15-18-52)28-10-11-33-35(22-28)51(3)45(62)54(33)34-12-13-36(55)50-42(34)58/h4-11,20-22,27,32,34,48H,12-19,23-25H2,1-3H3,(H,49,61)(H,56,57)(H,59,60)(H,50,55,58)/t32-,34+/m0/s1
InChIKeyIBRISDNPWJIHLN-UZNNEEJFSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CN1C(=O)N([CH]2CCC(=O)NC2=O)c3ccc(cc13)C4CCN(CC4)C(=O)Nc5cccc(C[S](=O)(=O)N6CC[CH](CC6(C)C)Nc7cccc(c7)c8sc(C(O)=O)c(OCC(O)=O)c8Cl)c5
OpenEye OEToolkits 2.0.7CC1(CC(CCN1S(=O)(=O)Cc2cccc(c2)NC(=O)N3CCC(CC3)c4ccc5c(c4)N(C(=O)N5C6CCC(=O)NC6=O)C)Nc7cccc(c7)c8c(c(c(s8)C(=O)O)OCC(=O)O)Cl)C
OpenEye OEToolkits 2.0.7CC1(C[C@H](CCN1S(=O)(=O)Cc2cccc(c2)NC(=O)N3CCC(CC3)c4ccc5c(c4)N(C(=O)N5[C@@H]6CCC(=O)NC6=O)C)Nc7cccc(c7)c8c(c(c(s8)C(=O)O)OCC(=O)O)Cl)C
CACTVS 3.385CN1C(=O)N([C@@H]2CCC(=O)NC2=O)c3ccc(cc13)C4CCN(CC4)C(=O)Nc5cccc(C[S](=O)(=O)N6CC[C@@H](CC6(C)C)Nc7cccc(c7)c8sc(C(O)=O)c(OCC(O)=O)c8Cl)c5
ACDLabs 12.01O=C1NC(=O)CCC1N1c2ccc(cc2N(C)C1=O)C1CCN(CC1)C(=O)Nc1cccc(c1)CS(=O)(=O)N1CCC(CC1(C)C)Nc1cccc(c1)c1sc(c(OCC(=O)O)c1Cl)C(=O)O
FormulaC46 H50 Cl N7 O11 S2
Name(5P)-3-(carboxymethoxy)-4-chloro-5-(3-{[(4S)-1-({3-[(4-{1-[(3R)-2,6-dioxopiperidin-3-yl]-3-methyl-2-oxo-2,3-dihydro-1H-benzimidazol-5-yl}piperidine-1-carbonyl)amino]phenyl}methanesulfonyl)-2,2-dimethylpiperidin-4-yl]amino}phenyl)thiophene-2-carboxylic acid
ChEMBL
DrugBank
ZINC
PDB chain8uh6 Chain B Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8uh6 Mechanistic insights into a heterobifunctional degrader-induced PTPN2/N1 complex.
Resolution3.3 Å
Binding residue
(original residue number in PDB)
N351 P352 W380 W386 W400 F402
Binding residue
(residue number reindexed from 1)
N308 P309 W337 W343 W357 F359
Annotation score1
External links
PDB RCSB:8uh6, PDBe:8uh6, PDBj:8uh6
PDBsum8uh6
PubMed39152201
UniProtQ96SW2|CRBN_HUMAN Protein cereblon (Gene Name=CRBN)

[Back to BioLiP]