Structure of PDB 8ucg Chain B Binding Site BS01

Receptor Information
>8ucg Chain B (length=379) Species: 1343739 (Palaeococcus pacificus DY20341) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MVSSYFKGILLNLDEERIEVLENKGGIVEDEFEGMRYLRLKDSARSLRRG
TVVFDEHNIILGFPHIKRVVQLENGIRRAFKRKPFYVEEAVDGYNVRVAK
IGEKILVFTRGGFVCPFTTERIEDFITLDFFKDYPNMVLCGEMAGPESPY
LVEGPPYVKEDIQFFLFDIQEKKTGRSLPVEERLKLAEEYGIPSVEVFGL
YDLSRIDELHALIDRLTKEKREGIVMKSPDMKKIVKYVTPYANINDIKIG
ARIFFDLPHGYFMQRIKRLAFYLAERKIRGEEFDEYARALGKVLLEPFVE
SIWDISSGDDEIAELFTVRVKKLETAHKMVTHFERLRLKIHIDDIEVLDN
GYWRITFKRVYPDATKEMRELWNGHAFVD
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain8ucg Chain B Residue 404 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8ucg Characterisation and Engineering of a Thermophilic RNA Ligase from Palaeococcus pacificus
Resolution1.86 Å
Binding residue
(original residue number in PDB)		D94 D248
Binding residue
(residue number reindexed from 1)		D92 D246
Annotation score4
Enzymatic activity
Enzyme Commision number 6.5.1.3: RNA ligase (ATP).
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016874 ligase activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:8ucg, PDBe:8ucg, PDBj:8ucg
PDBsum8ucg
PubMed38421610
UniProtA0A075LQ94

[Back to BioLiP]