Structure of PDB 8sp0 Chain B Binding Site BS01

Receptor Information
>8sp0 Chain B (length=469) Species: 429344 (Maribacter polysiphoniae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKELIYIEEPKILFAHGQKCTDARDGLALFGPLNNLYGIKSGVIGTKQGL
KIFRDYLDHIQKPIYNSNSITRPMFPGFEAVFDCKWESTGITFKEVTNED
IGKFLYNSSTHKRTYDLVSLFIDKIISANKNEDENVDVWFVIVPDEIYKY
CRPNSVLPAETYNYDAQFHDQFKARLLKHTIPTQIFRESTLAWRDFKNAF
GLPIRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDVRNGVCYLGLVYKKV
EKSKNPRNACCAAQMFLDNGDGTVFKGEVGPWYNPKNGQYHLEPKEAKAL
LSQSLQSYKEQIGEYPKEVFIHAKTRFNHQEWDAFLEVTPKETNLVGVTI
SKTKPLKLYKTEGDYTILRGNAYVVNERSAFLWTVGYVPKIQTALSMEVP
NPLFIEINKGEADIKQVLKDILSLTKLNYNACIFADGEPVTLRFADKIGE
ILTASTDIKTPPLAFKYYI
Ligand information
>8sp0 Chain C (length=21) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ugacggcucuaaucuauuagu
.....................
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8sp0 Oligomerization-mediated activation of a short prokaryotic Argonaute.
Resolution3.33 Å
Binding residue
(original residue number in PDB)		Y148 H207 I223 F224 R225 T228 F245 H251 L252 T255 N325 K395 S434 N468 A469 G475 R481 I507
Binding residue
(residue number reindexed from 1)		Y148 H169 I185 F186 R187 T190 F207 H213 L214 T217 N287 K357 S396 N430 A431 G437 R443 I469
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding

View graph for
Molecular Function
External links
PDB RCSB:8sp0, PDBe:8sp0, PDBj:8sp0
PDBsum8sp0
PubMed37494956
UniProtA0A316E3U6

[Back to BioLiP]