Structure of PDB 8rkt Chain B Binding Site BS01

Receptor Information

>8rkt Chain B (length=87) Species: 34078 (Scytonema hofmannii)

ALTQERKQEIIVNYQVHETDTGSADVQVAMLTERINRLSLHLQANKKDHS
SRRGLLKLIGQRKRLLAYIQKDSREKYQALIGRLGIR

Ligand information

>8rkt Chain 1 (length=246)

agcgccgcaauucaugcugcuugcagccucugaauuuuguuaaaugaggg
uuaguuugacuguauaaauacagucuugcuuucugacccugguagcugcu
cacccugaugcugcugucaauagacaggauaggugcgcucccagcaauaa
gggcgcggauguacugcuguaguggcuacugaaucacccccgaucaaggg
ggaacccuccaaaagguggguugaaaggagaagucauuuaauaagg

.((((<<.<.<<<<.<<<<....>>>>...>>>>.>.>>........(((
(......<<<<<<<....>>>>>>>...<<<<<<<)))).<<<<<<<<<<
..<<<<...<<<<<<<<<....>>>>>....<<.)))).>>>>>>....>
>>>.<<<.......>>>...>>>>>>>>>>....>><<<<<......>>>
>><<<<<.<......>.>>>>>>>>>>...................

Receptor-Ligand Complex Structure

Structure summary

• PDB: 8rkt Conformational landscape of the type V-K CRISPR-associated transposon integration assembly.
• Resolution: 2.35 Å
• Binding residue (original residue number in PDB): Q6 H19 D22 T23 G24 S25 Q29 R36 L40 H43 N47 K49 D50 S52 S53 R55 G56 K59 K65 R66 L67 Y70 K73 D74
• Binding residue (residue number reindexed from 1): Q4 H17 D20 T21 G22 S23 Q27 R34 L38 H41 N45 K47 D48 S50 S51 R53 G54 K57 K63 R64 L65 Y68 K71 D72

Gene Ontology

Molecular Function

• GO:0019843 rRNA binding

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005840 ribosome
• GO:0022627 cytosolic small ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:8rkt, PDBe:8rkt, PDBj:8rkt
• PDBsum: 8rkt
• PubMed: 38834066
• UniProt: A0A139X9A4