Structure of PDB 8qu4 Chain B Binding Site BS01
Receptor Information
>8qu4 Chain B (length=87) Species:
9606
(Homo sapiens) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
IYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCH
QEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFRE
Ligand information
>8qu4 Chain A (length=13) Species:
9606
(Homo sapiens) [
Search peptide sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
KQKHRILKRRQAR
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
8qu4
Binding dynamics of a stapled peptide targeting the transcription factor NF-Y.
Resolution
1.38 Å
Binding residue
(original residue number in PDB)
I57 E92 S95 F96 S99 E100 E103 L125 F127
Binding residue
(residue number reindexed from 1)
I1 E36 S39 F40 S43 E44 E47 L69 F71
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0001228
DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0043565
sequence-specific DNA binding
GO:0046982
protein heterodimerization activity
Biological Process
GO:0006355
regulation of DNA-templated transcription
Cellular Component
GO:0005634
nucleus
GO:0016602
CCAAT-binding factor complex
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:8qu4
,
PDBe:8qu4
,
PDBj:8qu4
PDBsum
8qu4
PubMed
38470946
UniProt
P25208
|NFYB_HUMAN Nuclear transcription factor Y subunit beta (Gene Name=NFYB)
[
Back to BioLiP
]