Structure of PDB 8qkg Chain B Binding Site BS01
Receptor Information
>8qkg Chain B (length=336) Species:
5855
(Plasmodium vivax) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
GYKFNDEYRNLQWGLDLARLDETQDLINANRVSVTKICVIDSGIDYNHPD
LRNNIDVNVKELHGRKGVDDDSNGVVDDVYGANFVSNSGDPMDDNYHGTH
VSGIISAVGNNGIGIVGVDGHSKLVICKALDQHKLGRLGDMFKCIDYCIS
RQAHMISGSFSFDEYSNIFSASVEHLRSLGILFFVSASNCAHDIAKCDLA
VNHRYPPILSKTHNNVIAVANLKRDLDESYSLSVNSFYSNIYCQLAAPGT
NIYSTTPMNNYRKLNGTSMASPHVAAIASIVRSINPNLTYLQIVEILRNA
IVKLPSLTERVSWGGYVDILRAVNLAIDSKAAPYIK
Ligand information
>8qkg Chain D (length=6) Species:
32630
(synthetic construct) [
Search peptide sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
VTAADA
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
8qkg
Insights from structure-activity relationships and the binding mode of peptidic alpha-ketoamide inhibitors of the malaria drug target subtilisin-like SUB1
Resolution
1.538 Å
Binding residue
(original residue number in PDB)
Y371 H372 L405 K409 G411 R412 S434 F435 S436 N464 N546 G547 T548 S549
Binding residue
(residue number reindexed from 1)
Y96 H97 L130 K134 G136 R137 S159 F160 S161 N189 N265 G266 T267 S268
Enzymatic activity
Enzyme Commision number
3.4.21.62
: subtilisin.
Gene Ontology
Molecular Function
GO:0004252
serine-type endopeptidase activity
GO:0008236
serine-type peptidase activity
GO:0046872
metal ion binding
Biological Process
GO:0006508
proteolysis
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:8qkg
,
PDBe:8qkg
,
PDBj:8qkg
PDBsum
8qkg
PubMed
38503166
UniProt
E6Y8B9
[
Back to BioLiP
]