Structure of PDB 8q6y Chain B Binding Site BS01
Receptor Information
>8q6y Chain B (length=388) Species:
68223
(Streptomyces katrae) [
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ILDFPFTWDGTHLPAQIGELAPVVKVRTIAGAEAWLVSSYELVKQVLEDD
RFSLKNTSDPGVPRQYALTIPPEVVNNMGNITGAGLRKAVMKAINPKAPG
LQEWMEEHAAELVERMLKHGAPVDIRSMFTDPFSEAMHCQILGIPHEAAP
LLSESLPIAFMNSPREIPAARLNWDRDIAYMTARLDDTEQGLIGDLAKLR
GTEGYEHVSDEMFATVGVTLFGAGVISTAGFLAMALVTLLTHPEEADHLA
DHPELMPQAVDELLRINLSIGDGLPRLAMEDMTLGEVEVKKGELVLVLPE
GANFDPSVFPDPHRLDFTRANSSAHFSFGGGSHYCPATALGKKHAEIGLR
AVLAAMPRLRLAVPVEQLVWRTGFMKRLPERLPVMWGS
Ligand information
Ligand ID
HEM
InChI
InChI=1S/C34H34N4O4.Fe/c1-7-21-17(3)25-13-26-19(5)23(9-11-33(39)40)31(37-26)16-32-24(10-12-34(41)42)20(6)28(38-32)15-30-22(8-2)18(4)27(36-30)14-29(21)35-25;/h7-8,13-16H,1-2,9-12H2,3-6H3,(H4,35,36,37,38,39,40,41,42);/q;+2/p-2/b25-13-,26-13-,27-14-,28-15-,29-14-,30-15-,31-16-,32-16-;
InChIKey
KABFMIBPWCXCRK-RGGAHWMASA-L
SMILES
Software
SMILES
OpenEye OEToolkits 1.7.6
Cc1c2n3c(c1CCC(=O)O)C=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C8N6C(=C5)C(=C8C)C=C)C(=C(C7=C2)C)C=C)C)CCC(=O)O
CACTVS 3.385
CC1=C(CCC(O)=O)C2=Cc3n4[Fe]5|6|N2=C1C=c7n5c(=CC8=N|6C(=Cc4c(C)c3CCC(O)=O)C(=C8C=C)C)c(C)c7C=C
ACDLabs 12.01
C=1c3c(c(c4C=C5C(=C(C=6C=C7C(=C(C8=CC=2C(=C(C=1N=2[Fe](n34)(N5=6)N78)CCC(=O)O)C)\C=C)C)\C=C)C)C)CCC(=O)O
Formula
C34 H32 Fe N4 O4
Name
PROTOPORPHYRIN IX CONTAINING FE;
HEME
ChEMBL
DrugBank
DB18267
ZINC
PDB chain
8q6y Chain B Residue 501 [
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Receptor-Ligand Complex Structure
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PDB
8q6y
Intramolecular Coupling and Nucleobase Transfer - How Cytochrome P450 Enzymes GymBx Establish Their Chemoselectivity
Resolution
1.81 Å
Binding residue
(original residue number in PDB)
H145 G231 S234 T235 F238 R283 S334 F335 H340 C342 P343 A344
Binding residue
(residue number reindexed from 1)
H138 G224 S227 T228 F231 R276 S327 F328 H333 C335 P336 A337
Annotation score
1
Gene Ontology
Molecular Function
GO:0004497
monooxygenase activity
GO:0008395
steroid hydroxylase activity
GO:0036199
cholest-4-en-3-one 26-monooxygenase activity
GO:0046872
metal ion binding
Biological Process
GO:0006707
cholesterol catabolic process
View graph for
Molecular Function
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Biological Process
External links
PDB
RCSB:8q6y
,
PDBe:8q6y
,
PDBj:8q6y
PDBsum
8q6y
PubMed
UniProt
A0A0F4JF04
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