Structure of PDB 8ppp Chain B Binding Site BS01
Receptor Information
>8ppp Chain B (length=498) Species:
2017
(Streptoalloteichus hindustanus) [
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MGYLHRVVEGLKANAGGEALVSADRRLTGAETLEEIHRTARALAAQGLRP
GDGVVTLHGNGVEAVVLRIAVQLLGCRYAGLRPVFATREKANFLAEAEAA
AFVYQPDMADEAAELLREVPTPRVLSLGPAPLGEDLVALAGAQSAEPVEF
TADERAATAVGFTAKGVCRAPFDLEACLDASLTIFGEGPWRFLVCIPIAD
LGGEMAEWTLAAGGTVVLREDFEPADILATIGAERTTHVFCAPGWVYQLA
EHPALADADLSSLTQIPYGGAPSTPARIADALEKLGRPLLVHCYGSQEGG
WMTWLSAEDHVRADRYLLNSVGKALPGTEIAIRDQDGADLPVGTVGEVCV
RSTMLMRGYWRLPELTAKTVRDGWLHTGDLGRLDTEGYLYLVDRAKDVII
VEAYNVYSQEVEHVLTGHPDVRYAAVVGVPDHDTTEAVYAAVVPAEGVGE
IDVDELRALVRTTLGPVHEPKHLDVVDTIPTTPRGHPDKSALRTRWRA
Ligand information
Ligand ID
APC
InChI
InChI=1S/C11H18N5O12P3/c12-9-6-10(14-2-13-9)16(3-15-6)11-8(18)7(17)5(27-11)1-26-29(19,20)4-30(21,22)28-31(23,24)25/h2-3,5,7-8,11,17-18H,1,4H2,(H,19,20)(H,21,22)(H2,12,13,14)(H2,23,24,25)/t5-,7-,8-,11-/m1/s1
InChIKey
CAWZRIXWFRFUQB-IOSLPCCCSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(C[P@](=O)(O)OP(=O)(O)O)O)O)O)N
CACTVS 3.341
Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)C[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(CP(=O)(O)OP(=O)(O)O)O)O)O)N
ACDLabs 10.04
O=P(O)(O)OP(=O)(O)CP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
CACTVS 3.341
Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
Formula
C11 H18 N5 O12 P3
Name
DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER;
ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE
ChEMBL
CHEMBL132722
DrugBank
DB02596
ZINC
ZINC000008295117
PDB chain
8ppp Chain B Residue 601 [
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Receptor-Ligand Complex Structure
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PDB
8ppp
Broad Spectrum Enantioselective Amide Bond Synthetase from Streptoalloteichus hindustanus.
Resolution
2.57 Å
Binding residue
(original residue number in PDB)
T163 G276 A277 P278 H298 C299 Y300 G301 S302 Q303 D385
Binding residue
(residue number reindexed from 1)
T163 G270 A271 P272 H292 C293 Y294 G295 S296 Q297 D379
Annotation score
1
Enzymatic activity
Enzyme Commision number
?
External links
PDB
RCSB:8ppp
,
PDBe:8ppp
,
PDBj:8ppp
PDBsum
8ppp
PubMed
38269041
UniProt
A0A1M5ABR5
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