Structure of PDB 8pos Chain B Binding Site BS01

Receptor Information
>8pos Chain B (length=165) Species: 292805 (Wolbachia endosymbiont strain TRS of Brugia malayi) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EGVTIEFKIVGLNKKLKVFTTCPHTLFGASFCAVAIEHPIVQDLMSKEIQ
DLISSIKIQGEKVGIYTGLNVKHPFLDKELPLYVANFVLMEYREGAIFGC
PAHDQRDFEFAQEYDLPIIPVISSEEYTNNSIMFNSEFLNGLTVSEARKV
IVEKLEEKGIGKKTI
Ligand information
Ligand ID7RZ
InChIInChI=1S/C29H35BBrN7O9P/c1-37(13-17-6-3-2-4-7-17)10-5-11-42-19-9-8-18(31)22-20(12-32)45-30(23(19)22)46-25-21(14-43-48(39,40)41)44-29(26(25)47-30)38-16-36-24-27(33)34-15-35-28(24)38/h2-4,6-9,15-16,20-21,25-26,29H,5,10-14,32H2,1H3,(H2,33,34,35)(H2,39,40,41)/t20-,21-,25-,26-,29-/m1/s1
InChIKeyOOVYGSSPEYCEFD-LIBJEQSZSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CN(CCCOc1ccc(Br)c2[CH](CN)O[B]3(O[CH]4[CH](CO[P](O)(O)=O)O[CH]([CH]4O3)n5cnc6c(N)ncnc56)c12)Cc7ccccc7
OpenEye OEToolkits 2.0.7B12(c3c(ccc(c3[C@H](O1)CN)Br)OCCCN(C)Cc4ccccc4)O[C@@H]5[C@H](O[C@H]([C@@H]5O2)n6cnc7c6ncnc7N)COP(=O)(O)O
OpenEye OEToolkits 2.0.7B12(c3c(ccc(c3C(O1)CN)Br)OCCCN(C)Cc4ccccc4)OC5C(OC(C5O2)n6cnc7c6ncnc7N)COP(=O)(O)O
CACTVS 3.385CN(CCCOc1ccc(Br)c2[C@@H](CN)O[B]3(O[C@@H]4[C@@H](CO[P](O)(O)=O)O[C@H]([C@@H]4O3)n5cnc6c(N)ncnc56)c12)Cc7ccccc7
FormulaC29 H35 B Br N7 O9 P
Name[(1R,3'S,5S,6R,8R)-3'-(aminomethyl)-8-(6-aminopurin-9-yl)-4'-bromanyl-7'-[3-[methyl-(phenylmethyl)amino]propoxy]spiro[2,4,7-trioxa-3$l^{4}-borabicyclo[3.3.0]octane-3,1'-3H-2,1$l^{4}-benzoxaborole]-6-yl]methyl dihydrogen phosphate;
AMP adduct with 3-[[(3S)-3-(aminomethyl)-4-bromanyl-1,3-dihydro-2,1-benzoxaborol-7-yl]oxy]-N-methyl-N-(phenylmethyl)propan-1-amine
ChEMBL
DrugBank
ZINC
PDB chain8pos Chain B Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8pos Targeting A Microbiota Wolbachian Aminoacyl-tRNA Synthetase To Block Its Pathogenic Host
Resolution2.137 Å
Binding residue
(original residue number in PDB)
F240 T241 T242 C243 T246 L313 Y316 I321 F322 D328 R330 D331
Binding residue
(residue number reindexed from 1)
F19 T20 T21 C22 T25 L89 Y92 I97 F98 D104 R106 D107
Annotation score1
Enzymatic activity
Enzyme Commision number 6.1.1.4: leucine--tRNA ligase.
External links
PDB RCSB:8pos, PDBe:8pos, PDBj:8pos
PDBsum8pos
PubMed38985862
UniProtQ5GS31|SYL_WOLTR Leucine--tRNA ligase (Gene Name=leuS)

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