Structure of PDB 8p6f Chain B Binding Site BS01

Receptor Information

>8p6f Chain B (length=510) Species: 986 (Flavobacterium johnsoniae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

DKIRILWVDDEIDLLKPHILFLEKKNYEVTTSNNGLDAIALFEEENFDIV
FLDENMPGMSGLETLSEMKEKKSAIPMIMITKSEEEYIMEEAIGSKIADY
LIKPVNPNQILLSLKKNLDDSRLITEKTTLDYQKEFRKISMELAMVNSYE
DWVELYKKLLFWELKLEDINDQAMIEILESQKVEANSQFGKYIERNYEDW
FAPKADKPIQSHNLFKELVVPEIKKKDKPILFVVIDNLRYDQWKSFETVI
SNYYKLEKEVPYFSILPTATQYARNAIFSGLMPLDMEKQFPQYWKNDVED
GGKNLYEAEFLSAQIKRLGLNIKEDYFKITNYAGGKKLAENFKALKGNDL
VTVVYNFVDMLSHAKTEMEVVKELASDDKAYRSLTLSWFKNSPLLEIIQQ
AQLLGFKLILTTDHGTINVKNPSKVVGNLRYKTGRSLTYEQKDVYVVKEP
KTIGLPAINMSSSFIFAKNDFFLAYVNNYNHYVSYYKNTYQHGGISLEEM
IIPFLVFNPK

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

8p6f Chain B Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	8p6f Structure-function analysis of PorX Fj , the PorX homolog from Flavobacterium johnsioniae, suggests a role of the CheY-like domain in type IX secretion motor activity.
Resolution	2.0 Å
Binding residue (original residue number in PDB)	D11 D54 N56
Binding residue (residue number reindexed from 1)	D10 D53 N55
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0046872	metal ion binding

	Biological Process
GO:0000160	phosphorelay signal transduction system

View graph for
Molecular Function

View graph for
Biological Process

External links

PDB	RCSB:8p6f, PDBe:8p6f, PDBj:8p6f
PDBsum	8p6f
PubMed	38503809
UniProt	A0A1M5SPD1

[Back to BioLiP]