Structure of PDB 8p5y Chain B Binding Site BS01

Receptor Information
>8p5y Chain B (length=122) Species: 1895 (Streptomyces avidinii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DQAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDS
APATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTY
GTTEANAWMSTLVGHDTFTKVK
Ligand information
Ligand IDWZQ
InChIInChI=1S/C21H31N5O3S/c27-19(6-2-1-5-18-20-16(13-30-18)25-21(28)26-20)23-8-7-22-11-15-10-14-4-3-9-29-17(14)12-24-15/h10,12,16,18,20,22H,1-9,11,13H2,(H,23,27)(H2,25,26,28)/t16-,18-,20-/m0/s1
InChIKeyMHAGGLFGLHLTFP-QRFRQXIXSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7c1c2c(cnc1CNCCNC(=O)CCCC[C@H]3[C@@H]4[C@H](CS3)NC(=O)N4)OCCC2
CACTVS 3.385O=C(CCCC[CH]1SC[CH]2NC(=O)N[CH]12)NCCNCc3cc4CCCOc4cn3
OpenEye OEToolkits 2.0.7c1c2c(cnc1CNCCNC(=O)CCCCC3C4C(CS3)NC(=O)N4)OCCC2
CACTVS 3.385O=C(CCCC[C@@H]1SC[C@@H]2NC(=O)N[C@H]12)NCCNCc3cc4CCCOc4cn3
FormulaC21 H31 N5 O3 S
Name5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-[2-(3,4-dihydro-2~{H}-pyrano[2,3-c]pyridin-6-ylmethylamino)ethyl]pentanamide
ChEMBL
DrugBank
ZINC
PDB chain8p5y Chain B Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8p5y Manganese Transfer Hydrogenases Based on the Biotin-Streptavidin Technology.
Resolution1.88 Å
Binding residue
(original residue number in PDB)
S27 Y43 G48 N49 W79 S88 T90 W92 W108 Y112 M121 D128
Binding residue
(residue number reindexed from 1)
S15 Y31 G36 N37 W67 S76 T78 W80 W96 Y100 M109 D116
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0005576 extracellular region

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Molecular Function

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Cellular Component
External links
PDB RCSB:8p5y, PDBe:8p5y, PDBj:8p5y
PDBsum8p5y
PubMed37671593
UniProtP22629|SAV_STRAV Streptavidin

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