Structure of PDB 8p1q Chain B Binding Site BS01

Receptor Information
>8p1q Chain B (length=405) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PNDWRRVDGWPVGLKNVGCWFSAVIQSLFQLPEFRRLVLSYSLCRSHTEK
RNIMFMQELQYLFALMMSNRKFVDPSAALDLLKDVSEFTHKLLDWLEDAF
QLAVNVNSNKSENPMVQLFYGTFLTEGVREGKPFCNNETFGQYPLQVNGY
RNLDECLEGAMVEGDVKYGQERWFTKLPPVLTFELSRFKLEFPQIIYMDR
YMYRSKELIRNKRECIRKLKEEIKILQQKLERYVKYGSGPARFPLPDMLK
YVIEFASTKGAPRTVTDEEINFVKTCLQRWRSEIEQDIQDLKTCIASTTQ
TIEQMYCDPLLRQVPYRLHAVLVHEGQANAGHYWAYIYNQPRQSWLKYND
ISVTESSWEEVERDSYGGLRNVSAYCLMYINDKLPEALSVELKHYIQEDN
WRFEQ
Ligand information
Ligand IDWFT
InChIInChI=1S/C25H29N5OS/c1-14-2-9-21-22(26)23(32-25(21)27-14)24(31)29-17-5-3-16-11-20(8-4-15(16)10-17)30-12-18-6-7-19(13-30)28-18/h2,4,8-9,11,17-19,28H,3,5-7,10,12-13,26H2,1H3,(H,29,31)/t17-,18-,19+/m0/s1
InChIKeyUZKKSCQGVUDMFY-GBESFXJTSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7Cc1ccc2c(c(sc2n1)C(=O)NC3CCc4cc(ccc4C3)N5CC6CCC(C5)N6)N
OpenEye OEToolkits 2.0.7Cc1ccc2c(c(sc2n1)C(=O)N[C@H]3CCc4cc(ccc4C3)N5C[C@H]6CC[C@@H](C5)N6)N
CACTVS 3.385Cc1ccc2c(N)c(sc2n1)C(=O)N[CH]3CCc4cc(ccc4C3)N5C[CH]6CC[CH](C5)N6
CACTVS 3.385Cc1ccc2c(N)c(sc2n1)C(=O)N[C@H]3CCc4cc(ccc4C3)N5C[C@@H]6CC[C@H](C5)N6
FormulaC25 H29 N5 O S
Name3-azanyl-N-[(2S)-6-[(1S,5R)-3,8-diazabicyclo[3.2.1]octan-3-yl]-1,2,3,4-tetrahydronaphthalen-2-yl]-6-methyl-thieno[2,3-b]pyridine-2-carboxamide
ChEMBL
DrugBank
ZINC
PDB chain8p1q Chain B Residue 801 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8p1q USP28 in complex with FT206
Resolution2.79 Å
Binding residue
(original residue number in PDB)
S257 L264 F292 T364 E366 L590 H592 Y601 Y643 C644
Binding residue
(residue number reindexed from 1)
S86 L93 F119 T182 E184 L322 H324 Y333 Y375 C376
Annotation score1
Enzymatic activity
Enzyme Commision number 3.4.19.12: ubiquitinyl hydrolase 1.
External links
PDB RCSB:8p1q, PDBe:8p1q, PDBj:8p1q
PDBsum8p1q
PubMed
UniProtQ96RU2|UBP28_HUMAN Ubiquitin carboxyl-terminal hydrolase 28 (Gene Name=USP28)

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