Structure of PDB 8kfo Chain B Binding Site BS01

Receptor Information
>8kfo Chain B (length=581) Species: 9913 (Bos taurus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HKSEIAHRFKDLGEEHFKGLVLIAFSQYLQQCPFDEHVKLVNELTEFAKT
CVADESHAGCEKSLHTLFGDELCKVASLRETYGDMADCCEKQEPERNECF
LSHKDDSPDLPKLKPDPNTLCDEFKADEKKFWGKYLYEIARRHPYFYAPE
LLYYANKYNGVFQECCQAEDKGACLLPKIETMREKVLASSARQRLRCASI
QKFGERALKAWSVARLSQKFPKAEFVEVTKLVTDLTKVHKECCHGDLLEC
ADDRADLAKYICDNQDTISSKLKECCDKPLLEKSHCIAEVEKDAIPENLP
PLTADFAEDKDVCKNYQEAKDAFLGSFLYEYSRRHPEYAVSVLLRLAKEY
EATLEECCAKDDPHACYSTVFDKLKHLVDEPQNLIKQNCDQFEKLGEYGF
QNALIVRYTRKVPQVSTPTLVEVSRSLGKVGTRCCTKPESERMPCTEDYL
SLILNRLCVLHEKTPVSEKVTKCCTESLVNRRPCFSALTPDETYVPKAFD
EKLFTFHADICTLPDTEKQIKKQTALVELLKHKPKATEEQLKTVMENFVA
FVDKCCAADDKEACFAVEGPKLVVSTQTALA
Ligand information
Ligand IDOP6
InChIInChI=1S/C26H33N2O3/c1-27(2)26-9-8-24-20-23(6-7-25(24)21-26)5-4-22-10-12-28(13-11-22)14-15-30-18-19-31-17-16-29-3/h4-13,20-21H,14-19H2,1-3H3/q+1
InChIKeyWKTJDXGTTJINPQ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CN(C)c1ccc2cc(ccc2c1)/C=C/c3cc[n+](cc3)CCOCCOCCOC
CACTVS 3.385COCCOCCOCC[n+]1ccc(/C=C/c2ccc3cc(ccc3c2)N(C)C)cc1
OpenEye OEToolkits 2.0.7CN(C)c1ccc2cc(ccc2c1)C=Cc3cc[n+](cc3)CCOCCOCCOC
CACTVS 3.385COCCOCCOCC[n+]1ccc(C=Cc2ccc3cc(ccc3c2)N(C)C)cc1
FormulaC26 H33 N2 O3
Name6-[(~{E})-2-[1-[2-[2-(2-methoxyethoxy)ethoxy]ethyl]pyridin-1-ium-4-yl]ethenyl]-~{N},~{N}-dimethyl-naphthalen-2-amine
ChEMBL
DrugBank
ZINC
PDB chain8kfo Chain B Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8kfo Bioinspired two-stage assembled photosensitive protein engineering for tumor-specific mitochondrial targeted phototherapy
Resolution3.6 Å
Binding residue
(original residue number in PDB)
E226 F227 E299 Y331 E332 R335
Binding residue
(residue number reindexed from 1)
E224 F225 E297 Y329 E330 R333
Annotation score1
External links
PDB RCSB:8kfo, PDBe:8kfo, PDBj:8kfo
PDBsum8kfo
PubMed
UniProtP02769|ALBU_BOVIN Albumin (Gene Name=ALB)

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