Structure of PDB 8kco Chain B Binding Site BS01

Receptor Information
>8kco Chain B (length=307) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQLIYTPFTEDTETV
GQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLF
FFSFIYLGEVFKTYNVAVDYITVALLIWNFGVVGMISIHWKGPLRLQQAY
LIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETA
QERNETLFPALIYSSTRGVKLGLGDFIFYSVLVGKASATASGDWNTTIAC
FVAILIGLCLTLLLLAIFKKALPALPISITFGLVFYFATDYLVQPFMDQL
AFHQFYI
Ligand information
Ligand IDN60
InChIInChI=1S/C22H20F5N3O3/c1-20(2,18(32)28-11-21(23,24)22(25,26)27)19(33)30-16-14-9-4-3-7-12(14)13-8-5-6-10-15(13)29-17(16)31/h3-10,16H,11H2,1-2H3,(H,28,32)(H,29,31)(H,30,33)/t16-/m0/s1
InChIKeyOJPLJFIFUQPSJR-INIZCTEOSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CC(C)(C(=O)NCC(C(F)(F)F)(F)F)C(=O)N[C@H]1c2ccccc2-c3ccccc3NC1=O
CACTVS 3.385CC(C)(C(=O)NCC(F)(F)C(F)(F)F)C(=O)N[C@@H]1C(=O)Nc2ccccc2c3ccccc13
CACTVS 3.385CC(C)(C(=O)NCC(F)(F)C(F)(F)F)C(=O)N[CH]1C(=O)Nc2ccccc2c3ccccc13
OpenEye OEToolkits 2.0.7CC(C)(C(=O)NCC(C(F)(F)F)(F)F)C(=O)NC1c2ccccc2-c3ccccc3NC1=O
FormulaC22 H20 F5 N3 O3
Name2,2-dimethyl-N-[(7S)-6-oxo-5,7-dihydrobenzo[d][1]benzazepin-7-yl]-N'-(2,2,3,3,3-pentafluoropropyl)propanediamide;
RO4929097;
KK8645V7LE
ChEMBL
DrugBank
ZINC
PDB chain8kco Chain B Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8kco CryoEM structure of PS1-containing gamma-secretase in complex with MRK-560
Resolution2.8 Å
Binding residue
(original residue number in PDB)
V272 K380 G382 D385 K429 K430 L432
Binding residue
(residue number reindexed from 1)
V197 K220 G222 D225 K269 K270 L272
Annotation score1
External links
PDB RCSB:8kco, PDBe:8kco, PDBj:8kco
PDBsum8kco
PubMed
UniProtP49768|PSN1_HUMAN Presenilin-1 (Gene Name=PSEN1)

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