Structure of PDB 8kcm Chain B Binding Site BS01

Receptor Information
>8kcm Chain B (length=428) Species: 192952 (Methanosarcina mazei Go1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HMNPKRIRALKSGKQGDGPVVYWMSRDQRAEDNWALLFSRAIAKEANVPV
VVVFCLTDEFLEAGIRQYEFMLKGLQELEVSLSRKKIPSFFLRGDPGEKI
SRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGISIPFFEVDAHNVVPCWE
ASQKHEYAAHTFRPKLYALLPEFLEEFPELEPNSVTPDPLFEPWHFEPGE
KAAKKVMESFIADRLDSYGALRNDPTKNMLSNLSPYLHFGQISSQRVVLE
VEKAESNPGSKKAFLDEILIWKEISDNFCYYNPGYDGFESFPSWAKESLN
AHRNDVRSHIYTLEEFEAGKTHDPLWNASQMELLSTGKMHGYTRMYWAKK
ILEWSESPEKALEIAICLNDRYELDGRDPNGYAGIAWSIGGVHDRAWGER
EVTGKIRYMSYEGCKRKFDVKLYIEKYS
Ligand information
Receptor-Ligand Complex Structure
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PDB8kcm Visualizing the DNA repair process by a photolyase at atomic resolution
Resolution2.5 Å
Binding residue
(original residue number in PDB)		A160 H161 R256 N257 E301 W305 Y376 M379 W421 R429 W431 R441 Y442 M443 S444 R450 K451
Binding residue
(residue number reindexed from 1)		A159 H160 R222 N223 E267 W271 Y342 M345 W387 R395 W397 R407 Y408 M409 S410 R416 K417
Enzymatic activity
Enzyme Commision number 4.1.99.3: deoxyribodipyrimidine photo-lyase.
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003677 DNA binding
GO:0003904 deoxyribodipyrimidine photo-lyase activity
GO:0016829 lyase activity
Biological Process
GO:0000719 photoreactive repair
GO:0006281 DNA repair

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Molecular Function
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Biological Process
External links
PDB RCSB:8kcm, PDBe:8kcm, PDBj:8kcm
PDBsum8kcm
PubMed38033054
UniProtQ8PYK9

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