Structure of PDB 8k2h Chain B Binding Site BS01

Receptor Information
>8k2h Chain B (length=563) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VPVEGVAGGGTAYGFNDAEPLKQSTDPSEVPTADLVNVWCMPNTVNVGSQ
ETPRALEPINLLAARNERESFQIAMRPKVSWAASSPSGIVQVQCSDLCSS
AGDRLVVGQSLKLRRVVPVLGVPDALVPLDLPVSQLSLFPGETSVIWVSI
DVPTGQPPGQYEGEIIISAMKTDGEEDVVSNLSLRIKLRLTVWEFIIPVT
PSLPAVIGVSDTVIEDRFAVEHGSEDWYKKLDLHFKWLLQYRISPYFCKW
GESMRVLTYTSPWPADHPKSDEYLSDSRLAAYAVPYRQVIAGDDSRESYL
RKEVEILRSKPHWNKAYFYLWDEPLNMEHFDNVRKMASEIYAYAPDSRVL
TTYYCGPGDAPLAPTPFESFVKVPNLLRPYTQIYCTSEWVLGNREDLVKD
ILDELQTENGEEWWTYICLGPSDPHPNWHLGMRGTQQRAVMWRVWKEGGT
GFLYWGANCYEKATVPSAEVKFRRGLPPGDGVLYYPGEVFSSSSEPVASL
RLERLLSGLQDYEYLKLYESKYGREEAMGLLEKTGVYTGPERYTLEHRPI
DVLRGEVYNTCRP
Ligand information
Ligand IDGNL
InChIInChI=1S/C8H13NO4S/c1-3-9-5-7(12)6(11)4(2-10)13-8(5)14-3/h4-8,10-12H,2H2,1H3/t4-,5-,6+,7-,8-/m1/s1
InChIKeyDRHXTSWSUAJOJZ-JAJWTYFOSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.2CC1=N[C@@H]2[C@H]([C@H]([C@H](O[C@@H]2S1)CO)O)O
CACTVS 3.370CC1=N[C@@H]2[C@@H](O)[C@@H](O)[C@@H](CO)O[C@@H]2S1
OpenEye OEToolkits 1.7.2CC1=NC2C(C(C(OC2S1)CO)O)O
ACDLabs 12.01N1=C(SC2OC(C(O)C(O)C12)CO)C
CACTVS 3.370CC1=N[CH]2[CH](O)[CH](O)[CH](CO)O[CH]2S1
FormulaC8 H13 N O4 S
Name(3aR,5R,6R,7R,7aR)-5-(hydroxymethyl)-2-methyl-5,6,7,7a-tetrahydro-3aH-pyrano[3,2-d][1,3]thiazole-6,7-diol
ChEMBLCHEMBL403756
DrugBank
ZINCZINC000012503894
PDB chain8k2h Chain B Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8k2h Genetic and functional diversity of beta-N-acetylgalactosamine residue-targeting glycosidases expanded by deep-sea metagenome
Resolution2.2 Å
Binding residue
(original residue number in PDB)		D401 E402 T431 Y495 C497 L498 W534 D559
Binding residue
(residue number reindexed from 1)		D322 E323 T352 Y416 C418 L419 W455 D480
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003674 molecular_function
Biological Process
GO:0008150 biological_process

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Molecular Function
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Biological Process
External links
PDB RCSB:8k2h, PDBe:8k2h, PDBj:8k2h
PDBsum8k2h
PubMed38730244
UniProtQ7Y231

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