Structure of PDB 8jjm Chain B Binding Site BS01

Receptor Information

>8jjm Chain B (length=484) Species: 663 (Vibrio alginolyticus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

AQNGTMMQYFHWYVPNDGALWTQVENNASALSDNGFTALWLPPAYKGAGG
SNDVGYGVYDMYDLGEFDQQGSVRTKYGTKDQYLSAINTAHKNNIQIYGD
VVFNHRGGADGKSWVDTKRVDWNNRNIELGDKWIEAWVEFDFPGRNDKYS
NFHWTWYHFDGVDWDDAGEEKAIFKFKGEGKAWDWEVSSEKGNYDYLMYA
DLDMDHPEVKQELKDWGEWYINMTGVDGFRMDAVKHIKYQYLQEWIDHLR
WKTGKELFTVGEYWNYDVNQLHNFITKTSGSMSLFDAPLHMNFYNASKSG
GSYDMRQIMDGTLMKDNSVKAVTLVENHDTQPLQALESTVDWWFKPLAYA
FILLREEGYPSVFYADYYGAQYSDKGHDINMVKVPYIEELVTLRKDYAYG
KQHSYLDHWDVIGWTREGDAKHPHSMAVIMSDGPGGSKWMYTGKPSARYV
DKLGIRTEEVWTDANGWAEFPVNGGSVSVWVSVE

Ligand information

Ligand ID

InChI

InChI=1S/Ca/q+2

InChIKey

BHPQYMZQTOCNFJ-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Ca++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Ca+2]

Formula

Name

CALCIUM ION

PDB chain

8jjm Chain B Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8jjm The novel amylase function of the carboxyl terminal domain of Amy63.
Resolution	1.8 Å
Binding residue (original residue number in PDB)	G305 Y307 W413 D414 D436
Binding residue (residue number reindexed from 1)	G301 Y303 W409 D410 D432
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005509	calcium ion binding
GO:0046872	metal ion binding

	Biological Process
GO:0005975	carbohydrate metabolic process

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Molecular Function

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Biological Process

External links

PDB	RCSB:8jjm, PDBe:8jjm, PDBj:8jjm
PDBsum	8jjm
PubMed	37290279
UniProt	A0A0S2UQL4

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