Structure of PDB 8ipw Chain B Binding Site BS01

Receptor Information
>8ipw Chain B (length=361) Species: 446 (Legionella pneumophila) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AYQLLLSKETLNKILQYKQNLEKGLATPGKFFLEELSKQEKSISEMDITT
FTQLLIQSKKPQVFAESQVYHDGTDWTLEEESILGDVSVNMPVTMYNDGG
HGSSFKNHPKPISGYLAYVPGALLASGSGPTSDMKEVLDNGKLNQDKLNA
LYERRLLPQLIHFNELARQNEKQAAITIPGIGTGCFSGAYYDVIKPYVRN
ALIHILEKHKDSLPYIDIIHYDPYMGDEPAEKKIGHMSFRVSPSGVVRGT
TGQLDYPLGSNPDTHILVSIVAWDHFSWPGNDYWGGARQTDDGVKAASTD
TMGQVTGATGVYDKKWGRYMPPESFTKDRKGMSDWGDYVRENGIVFNGPV
LALDKSGKLDT
Ligand information
Ligand IDAR6
InChIInChI=1S/C15H23N5O14P2/c16-12-7-13(18-3-17-12)20(4-19-7)14-10(23)8(21)5(32-14)1-30-35(26,27)34-36(28,29)31-2-6-9(22)11(24)15(25)33-6/h3-6,8-11,14-15,21-25H,1-2H2,(H,26,27)(H,28,29)(H2,16,17,18)/t5-,6-,8-,9-,10-,11-,14-,15+/m1/s1
InChIKeySRNWOUGRCWSEMX-ZQSHOCFMSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)O)O)O)O)O)N
OpenEye OEToolkits 1.7.6c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@H](O4)O)O)O)O)O)N
ACDLabs 12.01O=P(OCC3OC(n1c2ncnc(N)c2nc1)C(O)C3O)(O)OP(=O)(O)OCC4OC(O)C(O)C4O
CACTVS 3.370Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@H](O)[C@H](O)[C@@H]4O)[C@@H](O)[C@H]3O
CACTVS 3.370Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH](O)[CH](O)[CH]4O)[CH](O)[CH]3O
FormulaC15 H23 N5 O14 P2
Name[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE;
Adenosine-5-Diphosphoribose
ChEMBL
DrugBankDB02059
ZINCZINC000014880207
PDB chain8ipw Chain B Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8ipw The sturecture of Legionella effector protein MavL with ADPR
Resolution2.35 Å
Binding residue
(original residue number in PDB)
H142 G221 G223 T224 G225 C226 F227 Y265 A313 D315 N322 T331 D332 D333
Binding residue
(residue number reindexed from 1)
H101 G180 G182 T183 G184 C185 F186 Y224 A272 D274 N281 T290 D291 D292
Annotation score4
Enzymatic activity
Enzyme Commision number ?
External links