Structure of PDB 8i02 Chain B Binding Site BS01

Receptor Information
>8i02 Chain B (length=369) Species: 4896 (Schizosaccharomyces pombe) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KKVSYFYDEDVGNYHYGPQHPMKPHRVRMVHNLVVNYNLYEKLNVITPVR
ATRNDMTRCHTDEYIEFLWRVTPDTMEKFQPHQLKFNVGDDCPVFDGLYE
FCSISAGGSIGAAQELNSGNAEIAINWAGGLHHAKKREASGFCYVNDIAL
AALELLKYHQRVLYIDIDVHHGDGVEEFFYTTDRVMTCSFHKFGEYFPGT
GHIKDTGIGTGKNYAVNVPLRDGIDDESYESVFKPVISHIMQWFRPEAVI
LQCGTDSLAGDRLGCFNLSMKGHSMCVDFVKSFNLPMICVGGGGYTVRNV
ARVWTYETGLLAGEELDENLPYNDYLQYYGPDYKLNVLSNNMENHNTRQY
LDSITSEIIENLRNLSFAP
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain8i02 Chain B Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8i02 Two assembly modes for SIN3 histone deacetylase complexes.
Resolution2.9 Å
Binding residue
(original residue number in PDB)		D173 H175
Binding residue
(residue number reindexed from 1)		D168 H170
Annotation score1
Enzymatic activity
Enzyme Commision number 3.5.1.98: histone deacetylase.
Gene Ontology
Molecular Function
GO:0004407 histone deacetylase activity
GO:0005515 protein binding
GO:0016787 hydrolase activity
GO:0031078 histone H3K14 deacetylase activity
GO:0032129 histone H3K9 deacetylase activity
GO:0033558 protein lysine deacetylase activity
GO:0034739 histone H4K16 deacetylase activity
GO:0140937 histone H4K12 deacetylase activity
GO:0180032 histone H4K5 deacetylase activity
GO:0180033 histone H4K48 deacetylase activity
Biological Process
GO:0006325 chromatin organization
GO:0010468 regulation of gene expression
GO:0031507 heterochromatin formation
GO:0040029 epigenetic regulation of gene expression
GO:0045815 transcription initiation-coupled chromatin remodeling
Cellular Component
GO:0000785 chromatin
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005829 cytosol
GO:0032221 Rpd3S complex
GO:0033698 Rpd3L complex
GO:0070210 Rpd3L-Expanded complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8i02, PDBe:8i02, PDBj:8i02
PDBsum8i02
PubMed37076472
UniProtO59702|CLR6_SCHPO Histone deacetylase clr6 (Gene Name=clr6)

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