Structure of PDB 8hhq Chain B Binding Site BS01

Receptor Information

>8hhq Chain B (length=249) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

ESADLRALAKHLYDSYIKSFPLTKAKARAILTGKDKSPFVIYDMNSLMMG
EDKIKKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLK
YGVHEIIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFE
FAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALEL
QLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTHPLLQEIYK

Ligand information

Ligand ID

GOA

InChI

InChI=1S/C2H4O3/c3-1-2(4)5/h3H,1H2,(H,4,5)

InChIKey

AEMRFAOFKBGASW-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 12.01	O=C(O)CO
OpenEye OEToolkits 1.7.0	C(C(=O)O)O
CACTVS 3.370	OCC(O)=O

Formula

C2 H4 O3

Name

GLYCOLIC ACID;
HYDROXYACETIC ACID;
HYDROXYETHANOIC ACID

PDB chain

8hhq Chain B Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8hhq Covalent Modifier Discovery Using Hydrogen/Deuterium Exchange-Mass Spectrometry.
Resolution	2.4 Å
Binding residue (original residue number in PDB)	C285 Y327 H449
Binding residue (residue number reindexed from 1)	C66 Y108 H230
Annotation score	1

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0003677	DNA binding
GO:0004879	nuclear receptor activity

	Biological Process
GO:0006355	regulation of DNA-templated transcription

	Cellular Component
GO:0005634	nucleus

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Molecular Function

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Cellular Component

External links

PDB	RCSB:8hhq, PDBe:8hhq, PDBj:8hhq
PDBsum	8hhq
PubMed	36994595
UniProt	P37231\|PPARG_HUMAN Peroxisome proliferator-activated receptor gamma (Gene Name=PPARG)

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