Structure of PDB 8gme Chain B Binding Site BS01

Receptor Information
>8gme Chain B (length=258) Species: 10665 (Tequatrovirus T4) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MFKRKSTAELAAQMAKLNGNKGFSSEDKGEWKLKLDNAGNGQAVIRFLPS
KNDEQAPFAILVNHGFKKNGKWYIETCSSTHGDYDSCPVCQYISKNDLYN
TDNKEYSLVKRKTSYWANILVVKDPAAPENEGKVFKYRFGKKIWDKINAM
IAVTPVDVTCPWEGANFVLKVKQVSGFSNYDESKFLNQSAIPNIDDESFQ
KELFEQMVDLSEMTSKDKFKSFEELNTKFGQVMGAAATAAKKADKVADDL
DAFNVDDF
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain8gme Chain B Residue 500 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8gme Crystal structure of the gp32-Dda-dT17 complex
Resolution4.98 Å
Binding residue
(original residue number in PDB)		H64 C77 C87 C90
Binding residue
(residue number reindexed from 1)		H64 C77 C87 C90
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003697 single-stranded DNA binding
GO:0046872 metal ion binding
Biological Process
GO:0006260 DNA replication
GO:0006281 DNA repair
GO:0006310 DNA recombination
GO:0039686 bidirectional double-stranded viral DNA replication
GO:0039693 viral DNA genome replication

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:8gme, PDBe:8gme, PDBj:8gme
PDBsum8gme
PubMed
UniProtP03695|SSB_BPT4 Single-stranded DNA-binding protein (Gene Name=32)

[Back to BioLiP]