Structure of PDB 8f5m Chain B Binding Site BS01

Receptor Information
>8f5m Chain B (length=591) Species: 466052 (Oshimavirus P7426) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ERIGTLLGWNLLEFPKERVRELQSTAEPTEGSYRNILDGLVNLVKEALGH
IPDALIGKDNVVMWPGSTGANFHLPGWRVSDFVRAPSRARTELPTSSLTL
IRGKKVFGDGIVGIFPPMPEIVPSPNGWAQVRMFSRRGNEIFRAWKGVIV
THPNVKEPLVAFDDGYGVEELGDVLEIHAILLQTQFTAEYTVQGLYYQGI
PGWWRYLDLDFAFPPDKAKLVEAGAPLELLYPIAQYLKLKGPNTGFGGIL
LSPKILPFLGLHGLEDGGLLAYTRRWRPGERVIFNRRPDLPTGQSAVELT
YLGLSPIADSVIAHEGDIASTGADYDGDIGYLFPTPEKGGLYMPFHGEAL
HRKDLPTKDYESGLHRWAGQVHAAHILGRVEVNTRRLLDVAWANGEDVPQ
DYLHAATEMIQVAVDRQKRDIQWPDFDFKSVKDPVMTDFWRLAVPGGKLT
PEGNTPAAKITNRWRAWETLDGYVGHPHMKNDLKPLASKISRVLARGEHR
RPGPVLAALAFALLAPEPRPKEVEDLLTAGLQSGKRHAVYDALVQMGLPA
NQATDHPELWLRLASKEELEAIFKQLGYRPAMEELEEALNA
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain8f5m Chain B Residue 700 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8f5m Tail-tape-fused virion and non-virion RNA polymerases of a thermophilic virus with an extremely long tail.
Resolution2.4 Å
Binding residue
(original residue number in PDB)		D327 D329 D331
Binding residue
(residue number reindexed from 1)		D324 D326 D328
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:8f5m, PDBe:8f5m, PDBj:8f5m
PDBsum8f5m
PubMed38182597
UniProtA7XXN5

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