Structure of PDB 8ezf Chain B Binding Site BS01

Receptor Information
>8ezf Chain B (length=416) Species: 220668 (Lactiplantibacillus plantarum WCFS1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SVAIDLPYDKRTITAQIDDENYAGKLVSQAATYHNKLSEQETVEKSLDNP
IGSDKLEELARGKHNIVIISSDHTRPVPSHIITPILLRRLRSVAPDAAIA
ILVATGFHRPSTHEELVNKYGEDIVNNEEIVMHVSTDDSSMVKIGQLPSG
GDCIINKVAAEADLLISEGFIESHFFAGFSGGRKSVLPGIASYKTIMANH
SGEFINSPKARTGNLMHNSIHKDMVYAARTAKLAFIINVVLDEDKKIIGS
FAGDMEAAHKVGCDFVKELSSVPAIDCDIAISTNGGYPLDQNIYQAVKGM
TAAEATNKEGGTIIMVAGARDGHGGEGFYHNLADVDDPKEFLDQIPDQWT
AQIFARILVHHHVIFVSDLVDPDLITNMHMELAKTLDEAMEKAYAREGQA
AKVTVIPDGLGVIVKA
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain8ezf Chain B Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8ezf Irreversible Inactivation of Lactate Racemase by Sodium Borohydride Reveals Reactivity of the Nickel-Pincer Nucleotide Cofactor
Resolution2.15 Å
Binding residue
(original residue number in PDB)		D396 E400
Binding residue
(residue number reindexed from 1)		D387 E391
Annotation score1
Enzymatic activity
Enzyme Commision number 5.1.2.1: lactate racemase.
Gene Ontology
Molecular Function
GO:0016853 isomerase activity
GO:0046872 metal ion binding
GO:0050043 lactate racemase activity

View graph for
Molecular Function
External links
PDB RCSB:8ezf, PDBe:8ezf, PDBj:8ezf
PDBsum8ezf
PubMed37886035
UniProtF9USS9|LARA_LACPL Lactate racemase (Gene Name=larA)

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