Structure of PDB 8ep4 Chain B Binding Site BS01

Receptor Information

>8ep4 Chain B (length=265) Species: 484018 (Phocaeicola plebeius DSM 17135) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

SSHHHHHHGSIDFSNAPKRLNNKYPLSDQKNEGGWVLNKKASDEFKGKKL
NEERWFPNNPKWKGRQPTFFAKENTTFEDGCCVMRTYKPEAGSLPEGYTH
TAGFLVSKELFLYGYFEARLRPNDSPWVFGFWMSNNERNWWTEIDICENC
PGNPANRHDLNSNVHVFKAPADKGDIKKHINFPAKYYIPFELQKDFHVWG
LDWSKEYIRLYIDGVLYREIENKYWHQPLRINLNNESNKWFGALPDDNNM
DSEYLIDYVRVWYKK

Ligand information

Ligand ID

InChI

InChI=1S/Ca/q+2

InChIKey

BHPQYMZQTOCNFJ-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Ca++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Ca+2]

Formula

Name

CALCIUM ION

PDB chain

8ep4 Chain B Residue 306 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	8ep4 The porphyran degradation system of the human gut microbiota is complete, phylogenetically diverse and geographically structured across Asian populations
Resolution	1.94 Å
Binding residue (original residue number in PDB)	E46 G82 D259
Binding residue (residue number reindexed from 1)	E44 G80 D257
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016787	hydrolase activity
GO:0033916	beta-agarase activity
GO:0046872	metal ion binding

	Biological Process
GO:0005975	carbohydrate metabolic process

View graph for
Molecular Function

View graph for
Biological Process

External links

PDB	RCSB:8ep4, PDBe:8ep4, PDBj:8ep4
PDBsum	8ep4
PubMed
UniProt	B5CYA6

[Back to BioLiP]