Structure of PDB 8eip Chain B Binding Site BS01

Receptor Information
>8eip Chain B (length=370) Species: 62977 (Acinetobacter baylyi ADP1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TSACENFLLPADQDGIQRQVTIFRYGQENSAPKAYLQAGLHADEFPGMLA
LKYLRDLLDEAARRNRIKGEIVIIPQANPIGLSQWKDGFLLGRFDHQTGT
NFNRDYPDLCQLTVEKLDGQLTENAEHNIDVIRKTMRSALSELKPEQAVD
VLRHKLISESCDADLVLDLHADNQAQCHMYTLTPLWPAMHDVAAEIDARA
VLLAEESGGHPFDEACSAPWMNLSRAFPDYPIPLACQSATFALGSNDEVD
LRLAQDQAEALFRILIRRGFIEDVHVGELPQLACEGTLLEAMQQLKAPCQ
GLIVYHNRLGDFVRSGDKVVSIVDPIGETVDILAHTDGVLFARHSQTYAY
PNKVIGKIAGKEPLPERKGF
Ligand information
Ligand ID7ID
InChIInChI=1S/C10H19N5O5/c11-5(8(17)18)4-7(16)15-6(9(19)20)2-1-3-14-10(12)13/h5-6H,1-4,11H2,(H,15,16)(H,17,18)(H,19,20)(H4,12,13,14)/t5-,6-/m0/s1
InChIKeyQCGCETFHYOEVAI-WDSKDSINSA-N
SMILES
SoftwareSMILES
CACTVS 3.385N[CH](CC(=O)N[CH](CCCNC(N)=N)C(O)=O)C(O)=O
OpenEye OEToolkits 2.0.7[H]/N=C(/N)\NCCC[C@@H](C(=O)O)NC(=O)C[C@@H](C(=O)O)N
CACTVS 3.385N[C@@H](CC(=O)N[C@@H](CCCNC(N)=N)C(O)=O)C(O)=O
OpenEye OEToolkits 2.0.7C(CC(C(=O)O)NC(=O)CC(C(=O)O)N)CNC(=N)N
ACDLabs 12.01O=C(NC(CCCNC(=N)N)C(=O)O)CC(N)C(=O)O
FormulaC10 H19 N5 O5
Name(2~{S})-4-[[(2~{S})-5-[[azanyl($l^{4}-azanylidene)methyl]amino]-1-$l^{1}-oxidanyl-1-oxidanylidene-pentan-2-yl]amino]-2-$l^{2}-azanyl-4-oxidanylidene-butanoic acid
ChEMBL
DrugBank
ZINCZINC000050026817
PDB chain8eip Chain B Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8eip Discovery of cyanophycin dipeptide hydrolase enzymes suggests widespread utility of the natural biopolymer cyanophycin.
Resolution2.24 Å
Binding residue
(original residue number in PDB)
H50 E53 R102 N112 H179 A180 D181 Y189 S216 D222 E223 K366
Binding residue
(residue number reindexed from 1)
H41 E44 R93 N103 H170 A171 D172 Y180 S207 D213 E214 K357
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0016788 hydrolase activity, acting on ester bonds
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:8eip, PDBe:8eip, PDBj:8eip
PDBsum8eip
PubMed36800389
UniProtQ6FCQ4

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