Structure of PDB 8djq Chain B Binding Site BS01

Receptor Information
>8djq Chain B (length=390) Species: 1078020 (Mycolicibacterium thermoresistibile ATCC 19527) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ATTTVGLTDLKVRLVRDDFADAVAWVARSLPSRPTVPVLAGVLLTGSDDG
LTISSFDYEVSAEVQIPAEIAAPGTVLVSGRLLSEITRALPNKPVDLSVE
GTRVSLTCGSARFSLPTMAVEDYPALPELPAETGSVPADLFAEAIGQVAV
AAGRDDTLPMLTGIRVEISGDRMVLAATDRFRLAVRELTWTTKTPDVEAA
VLVPAKTLAEAAKTGLDGSEVQLALGAGDGLLGIRSEGKRSTTRLLDAEF
PKFRQLLPTEHTAMATIGVGELTEAIKRVALVADRGAQVRMEFADDVLHL
SAGADDVGRAEEDLPVSFSGEPLTIAFNPGYLTDGLGALHSERVTFGFTT
PSKPAVLRPATEADAALNGNGPFPAAETDYVYLLMPVRLP
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8djq Interaction of the sliding clamp with mycobacterial polymerases
Resolution2.8 Å
Binding residue
(original residue number in PDB)
T179 R181 F182 R183 L184 P257 L262 M391 P392 V393 R394
Binding residue
(residue number reindexed from 1)
T178 R180 F181 R182 L183 P251 L256 M385 P386 V387 R388
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003887 DNA-directed DNA polymerase activity
GO:0008408 3'-5' exonuclease activity
Biological Process
GO:0006260 DNA replication
GO:0006271 DNA strand elongation involved in DNA replication
GO:0071897 DNA biosynthetic process
Cellular Component
GO:0005737 cytoplasm
GO:0009360 DNA polymerase III complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:8djq, PDBe:8djq, PDBj:8djq
PDBsum8djq
PubMed
UniProtG7CIP4

[Back to BioLiP]