Structure of PDB 8d5i Chain B Binding Site BS01

Receptor Information
>8d5i Chain B (length=270) Species: 77133 (uncultured bacterium) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MAKVKIVGILNVTPNSFHDGGRFVETDKAVVRARELLSQGADIIEIGGES
TGPGSNTITADEELARIVPVIRAIRSSLPDANIAVDTYKAEVARKALELG
ATMINDVSAGRADPKLFGVVARSNAQIVLMYSKDTDPHTSFDERQYVDVV
RTVYDFLAERKKAAMSAGIPADRIILDTGLGGFVSSDPQYSFQLLAHLSD
FQDLGCKLFLSPSRKSFLAGNELLKTADRLPGTIAASAIAVLHGADYIRT
HDVLEVRRGCEIATAINQPP
Ligand information
Ligand IDPOP
InChIInChI=1S/H4O7P2/c1-8(2,3)7-9(4,5)6/h(H2,1,2,3)(H2,4,5,6)/p-2
InChIKeyXPPKVPWEQAFLFU-UHFFFAOYSA-L
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0O[P@@](=O)([O-])O[P@@](=O)(O)[O-]
CACTVS 3.341O[P]([O-])(=O)O[P](O)([O-])=O
ACDLabs 10.04[O-]P(=O)(O)OP([O-])(=O)O
OpenEye OEToolkits 1.5.0OP(=O)([O-])OP(=O)(O)[O-]
FormulaH2 O7 P2
NamePYROPHOSPHATE 2-
ChEMBL
DrugBank
ZINC
PDB chain8d5i Chain B Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8d5i Crystal structure of dihydropteroate synthase H182G mutant (folP-SMZ_B27) from soil uncultured bacterium in complex with pteroic acid
Resolution1.82 Å
Binding residue
(original residue number in PDB)		R249 H251
Binding residue
(residue number reindexed from 1)		R249 H251
Annotation score5
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 29 09:39:03 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8d5i', asym_id = 'B', bs = 'BS01', title = 'Crystal structure of dihydropteroate synthase H1...ncultured bacterium in complex with pteroic acid '
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8d5i', asym_id='B', bs='BS01', title='Crystal structure of dihydropteroate synthase H1...ncultured bacterium in complex with pteroic acid ')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0004156,0009396,0042558,0044237', uniprot = '', pdbid = '8d5i', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004156,0009396,0042558,0044237', uniprot='', pdbid='8d5i', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>