Structure of PDB 8avp Chain B Binding Site BS01

Receptor Information
>8avp Chain B (length=121) Species: 1523420 (Rhizobium sp. AAP43) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TDFDSLSGTSTTWVNELGSVMTIDVDRKGGVTGYYVNNAPGTGCRGLPYD
LSGHAHGSTIAFSVVWSNGIADCRSATSWAGYARKTFGGGVQIVTQWSLA
FVGKAGGKIETGQNVFTYQAA
Ligand information
Ligand IDBTN
InChIInChI=1S/C10H16N2O3S/c13-8(14)4-2-1-3-7-9-6(5-16-7)11-10(15)12-9/h6-7,9H,1-5H2,(H,13,14)(H2,11,12,15)/t6-,7-,9-/m0/s1
InChIKeyYBJHBAHKTGYVGT-ZKWXMUAHSA-N
SMILES
SoftwareSMILES
CACTVS 3.385OC(=O)CCCC[CH]1SC[CH]2NC(=O)N[CH]12
CACTVS 3.385OC(=O)CCCC[C@@H]1SC[C@@H]2NC(=O)N[C@H]12
ACDLabs 12.01O=C1NC2C(SCC2N1)CCCCC(=O)O
OpenEye OEToolkits 1.7.6C1C2C(C(S1)CCCCC(=O)O)NC(=O)N2
OpenEye OEToolkits 1.7.6C1[C@H]2[C@@H]([C@@H](S1)CCCCC(=O)O)NC(=O)N2
FormulaC10 H16 N2 O3 S
NameBIOTIN
ChEMBLCHEMBL857
DrugBankDB00121
ZINCZINC000035024346
PDB chain8avp Chain B Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8avp Self-assembly of a dimeric avidin into unique higher-order oligomers.
Resolution2.87 Å
Binding residue
(original residue number in PDB)		L18 S20 Y36 N38 A40 G44 W67 C74 S76 T78 W98
Binding residue
(residue number reindexed from 1)		L17 S19 Y35 N37 A39 G43 W66 C73 S75 T77 W97
Annotation score4
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 21:22:26 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8avp', asym_id = 'B', bs = 'BS01', title = 'Self-assembly of a dimeric avidin into unique higher-order oligomers.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8avp', asym_id='B', bs='BS01', title='Self-assembly of a dimeric avidin into unique higher-order oligomers.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0009374', uniprot = '', pdbid = '8avp', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009374', uniprot='', pdbid='8avp', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>