Structure of PDB 8akh Chain B Binding Site BS01

Receptor Information
>8akh Chain B (length=320) Species: 1590 (Lactiplantibacillus plantarum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NTDEQVTKALNLSHFVGSALVVKNDHVIYNRAFGYANKAKNQRNKVNSKY
QILSIQKSMTAVGIMQLVQAGKVKLTDPISKYYPTLKHGRQTTLRQMLDM
TTGFRLKSGSKEFLPENQVIDFAAHNVFYYPDKNGIYNYSSVNFLLLAGI
IRKVTGQSYQHFFTTHFIDKLNLNETGFLIHGQGQDATTGYRALADQTLP
NYDQTMPESKSQMANELGTGQVYMSTADLFTVESAILKGQLLSKKNVAIL
HTRTATGEYGGGVYNMSNGIRSHGLGYGYESSIFLSPDGKTGVVLMSNYY
RKAAGIQATANKIFTELMKG
Ligand information
Ligand IDG3P
InChIInChI=1S/C3H9O6P/c4-1-3(5)2-9-10(6,7)8/h3-5H,1-2H2,(H2,6,7,8)/t3-/m1/s1
InChIKeyAWUCVROLDVIAJX-GSVOUGTGSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6C(C(COP(=O)(O)O)O)O
CACTVS 3.385OC[C@@H](O)CO[P](O)(O)=O
ACDLabs 12.01O=P(OCC(O)CO)(O)O
OpenEye OEToolkits 1.7.6C([C@H](COP(=O)(O)O)O)O
CACTVS 3.385OC[CH](O)CO[P](O)(O)=O
FormulaC3 H9 O6 P
NameSN-GLYCEROL-3-PHOSPHATE
ChEMBLCHEMBL1232920
DrugBankDB02515
ZINCZINC000003830896
PDB chain8akh Chain B Residue 504 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8akh Structure-function analysis of Lactiplantibacillus plantarum DltE& reveals D-alanylated lipoteichoic acids as direct cues supporting Drosophila juvenile growth.
Resolution1.4 Å
Binding residue
(original residue number in PDB)		L127 S128 Y213 E290 T293 G348 L349
Binding residue
(residue number reindexed from 1)		L53 S54 Y139 E216 T219 G274 L275
Annotation score1
Enzymatic activity
Enzyme Commision number 3.4.16.4: serine-type D-Ala-D-Ala carboxypeptidase.
Gene Ontology
Molecular Function
GO:0004180 carboxypeptidase activity
GO:0009002 serine-type D-Ala-D-Ala carboxypeptidase activity

View graph for
Molecular Function
External links
PDB RCSB:8akh, PDBe:8akh, PDBj:8akh
PDBsum8akh
PubMed37042660
UniProtA0A0P7JVD2

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