Structure of PDB 7ytb Chain B Binding Site BS01

Receptor Information
>7ytb Chain B (length=255) Species: 958 (Bdellovibrio) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SATTLTLQQFSTVYNMLSFAVASMLGAFAFFVMGRKIVGPKYRLALVVSS
LVVLIAGYHYWRIMGSWTAAYALKDGMYVPTGEPFNDAYRYVDWLLTVPL
LLTELVLVMKLKKESGSVLAKLILAAIAMIALGYPGEISNPESQAGARLM
WGVLSTVPFLYILYVLWVRLGDAIGEHPAKVQVLLKNTRYLILLTWGFYP
IVYAMGSYGWLGGAGSVVAVQVGYSIADVTAKALYGVMIFAIAYAKSEAD
GSLPA
Ligand information
Ligand IDRET
InChIInChI=1S/C20H28O/c1-16(8-6-9-17(2)13-15-21)11-12-19-18(3)10-7-14-20(19,4)5/h6,8-9,11-13,15H,7,10,14H2,1-5H3/b9-6+,12-11+,16-8+,17-13+
InChIKeyNCYCYZXNIZJOKI-OVSJKPMPSA-N
SMILES
SoftwareSMILES
CACTVS 3.370CC(=C\C=O)/C=C/C=C(C)/C=C/C1=C(C)CCCC1(C)C
ACDLabs 12.01O=C\C=C(\C=C\C=C(\C=C\C1=C(C)CCCC1(C)C)C)C
OpenEye OEToolkits 1.7.0CC1=C(C(CCC1)(C)C)/C=C/C(=C/C=C/C(=C/C=O)/C)/C
OpenEye OEToolkits 1.7.0CC1=C(C(CCC1)(C)C)C=CC(=CC=CC(=CC=O)C)C
CACTVS 3.370CC(=CC=O)C=CC=C(C)C=CC1=C(C)CCCC1(C)C
FormulaC20 H28 O
NameRETINAL
ChEMBLCHEMBL81379
DrugBank
ZINCZINC000004228262
PDB chain7ytb Chain B Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7ytb Phototrophy by antenna-containing rhodopsin pumps in aquatic environments.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		W95 V99 M130 S156 F160 W197 Y200 P201 Y204 K233
Binding residue
(residue number reindexed from 1)		W94 V98 M129 S155 F159 W196 Y199 P200 Y203 K232
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005216 monoatomic ion channel activity
GO:0009881 photoreceptor activity
Biological Process
GO:0006811 monoatomic ion transport
GO:0007602 phototransduction
GO:0034220 monoatomic ion transmembrane transport
Cellular Component
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7ytb, PDBe:7ytb, PDBj:7ytb
PDBsum7ytb
PubMed36859551
UniProtA0A977XLG0

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